| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0155 |
|---|
| Symbol | |
|---|
| ID | 4910039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 148724 |
|---|
| End bp | 150673 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640123905 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001055058 |
|---|
| Protein GI | 126458780 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.738373 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGCT TCTTCCCTAA CTACGAGCTG TCGCTGAAAG ACCCAGAGAC CTACTGGCGG
CGGGTGTTGG AGGCCTCGGC CGAGGACATA TACTGGGCTA AGTGGCCTGA CAAAATTTTT
GAGTGGGAGC CGCCTAAGCC GTTTAAGTGG TTTGTGGGCG GGTACACAAA CGCGGGCTTC
AGCGCCGTGT CTTACAAGAT TAGGAAGTAC CGCGACAAGC CCGCCTACAT CTACTACAGC
CCAGAGCTCG GCGTAGAGAG AAAAATAACC TACTGGGAGC TCTACCAGCT CGTCTGCGAC
TACGCCGCGG CTCTAAGGGC CGCTGGCGTG AGGAAGGGGG ATAGAGTGAT GGTGTACATG
CCGAACTCTA TCGAGGCGGT GGCGGTTATA CTGGCGGCGG CGAGAATAGG CGCGATTTCT
ACGACGGTCT TCGCGGGCTT TTCGCCCAAG GCTGTGGCCG ACAGGATAGA GCTCACCGAG
CCTAAGATAA TATTTACCCA GGACTATTCG CTTAGGCGTG GGCGTAGGGT GCCGCTGAAG
GAGAACATTG ACGAGGCTTT GAAGATTTCG CCGTGGCGGC CCGAGAAGGT GGTGGTAAAG
AGGGCGCTTC CCGAGGCGGA GGTGGCCATG GAGAAGGGCA GAGATTTGAC TCTCGACGAG
TTTCTCGAGT TGGGCAAGTA CACGGACTGT AGCCCCGTGT TTCTCGAGGC CAACGAACCC
CTCTTCATAA TGCCTACGTC TGGCACCACC GCTAAGCCGA AGCCTGTGGT GCACGTGCAC
GGGGGGTACC AAGTGTGGAT TTGGCACGGC GCAAAGCTCG TCTATGGGCT AGAGCCGGGG
GACGTGGTCT TCAACACGTC GGACATTGGG TGGATTGTGG GGCAGAGCTA CATAGTCTTC
GCCCCGCTGA TAATCGGCGC CACGTCTATA CTCTTCGACG GGGCAATAGA CTACCCGCGG
CCCGACGTGT TCTGGGAAGT GGTGGAGAAG TACCGGCCCA CTCTCATCTG GACGTCTCCC
ACGGCAGCTA GGCTTTTGAT GCGGCTCGGA GTAGAGCAGG CAAGGAAGCA CGACTTGAGC
AGCGTGAGGC GAGTCGTGAC CGCGGGGGAG GTATTGAACC CGGAGGTGTG GCGGTGGCTG
TACGAGGACG TCTTCCAGAG GAGGGTGCCC GTGATTGACC ACATGTGGCA GACCGAGACT
GGGGGGCCCA TCTTCGGGTA CCCATACGCC CTTGTAAAAG ATATGGGATA CGGCATGGAG
TATGTGAAAA TTAAGCCCGG CTCCGCGGGG CAACCCCTCC CCGGTGTGGA GTTCGAGATA
GTGGACGAGA AGGGCAATCC GCTACCGCCG ATGCATAAGG GGATTGTGGT AATAAAGCGC
CCCTTCCCGG GGCTCACGCC CACTCTGTGG AAGGACCACG AGAGGTATCT AAAGGACTAC
TGGCAGAGGT TCGAGGGAAG GCTGGTCTAC TACACCGGCG ACGCGGCGCA TGTGGACGAG
GAGGGCTACA TATGGTTTGG CGGGAGAGCA GACGAGGTTA TAAAAATCGC GGGGCACCGC
ATAGGCACTA TAGAGGTTGA GTCGGCCCTC TTGACACACC CCGCGGTGGC TGAGGCGGCT
GTGGTGGGCG TGCCCGACCC CCTGAGGGGG GAGGCCATCG CCGCCTTTGT GGTGCTAAAG
CCGGGCTGGC GCCCCACAGA GGAGCTCAAG AGAGAGTTGA TAGAACACGT GCGGAGGACC
TTTGGCCCAA TAGCCGTCTT CGCTGGGGTA GAGTTCGTCA ACATGTTGCC CAAGACGCGG
TCTGGCAAAA TCATGAGGAG AGTGCTTAAG AGGGTGTGGA CCGGCGAGCC CATAGGCGAC
ATATCCACCA TAGAGGAGGA GGCGTCTGTG GAAGAGGTAA AAGAGGCGGT GTCAAGGATG
AAAATATTAG CCGAGACGAG CAGGGAGTAG
|
|---|
| Protein sequence | MRSFFPNYEL SLKDPETYWR RVLEASAEDI YWAKWPDKIF EWEPPKPFKW FVGGYTNAGF
SAVSYKIRKY RDKPAYIYYS PELGVERKIT YWELYQLVCD YAAALRAAGV RKGDRVMVYM
PNSIEAVAVI LAAARIGAIS TTVFAGFSPK AVADRIELTE PKIIFTQDYS LRRGRRVPLK
ENIDEALKIS PWRPEKVVVK RALPEAEVAM EKGRDLTLDE FLELGKYTDC SPVFLEANEP
LFIMPTSGTT AKPKPVVHVH GGYQVWIWHG AKLVYGLEPG DVVFNTSDIG WIVGQSYIVF
APLIIGATSI LFDGAIDYPR PDVFWEVVEK YRPTLIWTSP TAARLLMRLG VEQARKHDLS
SVRRVVTAGE VLNPEVWRWL YEDVFQRRVP VIDHMWQTET GGPIFGYPYA LVKDMGYGME
YVKIKPGSAG QPLPGVEFEI VDEKGNPLPP MHKGIVVIKR PFPGLTPTLW KDHERYLKDY
WQRFEGRLVY YTGDAAHVDE EGYIWFGGRA DEVIKIAGHR IGTIEVESAL LTHPAVAEAA
VVGVPDPLRG EAIAAFVVLK PGWRPTEELK RELIEHVRRT FGPIAVFAGV EFVNMLPKTR
SGKIMRRVLK RVWTGEPIGD ISTIEEEASV EEVKEAVSRM KILAETSRE
|
|---|
| |