| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0100 |
|---|
| Symbol | |
|---|
| ID | 4908237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 99193 |
|---|
| End bp | 100434 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640123852 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001055005 |
|---|
| Protein GI | 126458727 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1571] Predicted DNA-binding protein containing a Zn-ribbon domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000405594 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGTCT TCTTGGGAAT CGACGACACA GACAGCCACG GCGGGGGCTG CACCACCTAC
GTGGCCTACG TCCTCGCAAA AGAGGTGCTG AAGAGGTGGG GCCCCCAGGC CTTCCTCGAC
TTCCCCCGCC TGGTTCGGCT AAACCCCAAC ATCCCCTTCA AGACCAGGGG CAACGCCGCG
GTGGCCCTGG CGCTGGACGT GCCAGACCCC GACGAGCTCT GGAGACTCGC CGTGGAGGTA
GTCACGGCGC TGGCCAGGCG GGAGGGGAAG ACAGACCCCG GCATCGCCAT GGCCGTTGGG
GAGGTCCCCG AGAGGGCCAA AGTCCTCTAC CGCATGGCCC TAACCCAGGT GGTCAGCCTA
AGCGCCGCGG AGCGGGCCGG GGCAACCACG TGGGGCGGCA GGGGGAAAAT AGGCGCAGTG
GCCGCCATCG GCGCCGACTT ACGCGAGTCC ACCTTCGAGC TGTTGGCCTA CCGCGAGGGA
GACCGAGCCG AGATACCGCC GAGCCTAGTG AAGGCAATGG AGGCCCTCAC CTACCCCTTC
ACCTTCCACA ACCTAGACCG CCGCAGAGTC CTGATACAGC CGAGGGGCCC CGACCCAGTC
TACTACGGCA TCAGAGGCCT CACCCCACAC CATCTCCTCT ACGCCAAGGC CCTCCTAGAG
GGGCAGGGGT ACCGGCCGGC GGGGTGGGCC ATCTTCCGCA CAAACCAAGC CACAGACGCC
CACCTGCGCC ACGGCGTAAT ATACGACGAG CCCCACCCCT ACTCCTACTA CATCGCCAAG
GGCATAATCG CCGAGGCCAG GCGCACCAAG GCCCGCCACG TCGTCGGCCG GCTAGACACC
GGCCTCCCCT TCGCCGCCTA CCGCCACCTA GGCCCACTAG CCACGGCGTT GGAGAAGTGC
GTCGGGTGCT ACGTCGAGCT CTACGGCGGC CTAAAGCCCA GACACGGGTC GCTATACCTA
TACGTCGAAC GCGCCCACAT CCACGGCCGC TACGTCAAGA TCAGGCAGAG GTGCCCCCAC
TGCGGAGGCT CCCTAGAAAG CCTCGGCAGA GGAAAAGGCT GGAAGTGCCG CAAATGCGGA
ACTATATACT ACGTCGCGGA GACCCTGTGG GTGCTCGACG TGACCCCCAG CGAGTATATA
CTCCCCCGCC CAGCCGAGTG GCGTCACCTA CTAAAACCAC CCAACCTAGA CACCACACTA
CCCAACCACT ACACACCCCA AAACGTCCAA TGGATAGAGT AG
|
|---|
| Protein sequence | MRVFLGIDDT DSHGGGCTTY VAYVLAKEVL KRWGPQAFLD FPRLVRLNPN IPFKTRGNAA
VALALDVPDP DELWRLAVEV VTALARREGK TDPGIAMAVG EVPERAKVLY RMALTQVVSL
SAAERAGATT WGGRGKIGAV AAIGADLRES TFELLAYREG DRAEIPPSLV KAMEALTYPF
TFHNLDRRRV LIQPRGPDPV YYGIRGLTPH HLLYAKALLE GQGYRPAGWA IFRTNQATDA
HLRHGVIYDE PHPYSYYIAK GIIAEARRTK ARHVVGRLDT GLPFAAYRHL GPLATALEKC
VGCYVELYGG LKPRHGSLYL YVERAHIHGR YVKIRQRCPH CGGSLESLGR GKGWKCRKCG
TIYYVAETLW VLDVTPSEYI LPRPAEWRHL LKPPNLDTTL PNHYTPQNVQ WIE
|
|---|
| |