| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_86417 |
|---|
| Symbol | YME1 |
|---|
| ID | 4850953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 543423 |
|---|
| End bp | 545981 |
|---|
| Gene Length | 2559 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | |
|---|
| GC content | 45% |
|---|
| IMG OID | 640392661 |
|---|
| Product | mitochondrial protein of the CDC48/PAS1/SEC18 family of ATPases |
|---|
| Protein accession | XP_001387744 |
|---|
| Protein GI | 126273914 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.933986 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATTCTTTTCG GTTGGCTCGG TTTGTTTTAG CTCAAAAGTT TTGCTTCGAC AAAATGAATA
CTCTCCTGAG AATGGCACCG GTGCTCTCGT CAGCCAGGAC ATCTCTTGCC CCCAGAGTCA
TGACTAACTT CAGAAACTTG AACAGCTTGA AAAACTTGAA AAACTTCTCC ACAAGATCTT
CTTTATCCTC ATGGAAGTCT TCGCCATCAT TGACGTCTCT CAAGTCATCA AGATTTCCTA
GAAAATCGCT CAACTCCGTT AGAAATGTTT CTTCTACGAC TGTTTCACTT CTTCAGTCTC
AGGAACAGAT GGCCAACTCT GACTTGAACA ATACTACGGC ACAAGCTGAG TTCTACCGTC
TGCTCCTTGC GCATAACTAT CCACACATTG TCATCCAGAG ATACGAGACT CCTGGAATCG
CGGCTTCTCC GGAGTGTACT GCTATCTACA TTGAAGCCTT AAACAAGATT GGAAAGAAAG
GTAAAGCAGA ACAAGTAGCT CGTAGTTTGG CTACCCAGAA TGTTGCATCT GCGGGAAATG
TTGCTACAGG CTTGCCCCAT GGCTTTGGCT CCCGCTACGA GCCTGTCCAC GTCATTGTCT
CTGAATCTCT CCTCACCATC CTCTCCAAAT GGATGAAATG GTTGATTCCC GTCGCACTCA
TGACTTACGG CGCTACCAAT GCGTTCAACT ACTTGGTAGA GAACGGTACC ATCTTCAAGA
ACTCAGAAGT GAGCGACAAA TCAGTAGACG TCTCGCAGTC TACGGTCCGC TTCTCGGATG
TCCAGGGCTG TGATGAGGCT CGTGCCGAGT TGGAGGAAAT CGTAGACTTC TTGAAGGATC
CCTCAAAGTT TACTGGATTG GGTGGAAAAT TGCCAAAGGG TGTCCTTTTG ACAGGCCCTC
CAGGTACTGG TAAGACTCTT TTGGCTCGTG CAACTGCAGG AGAAGCTGGA GTTCCGTTTT
TCTTCATGTC GGGCTCAGAG TTTGACGAGT TGTATGTAGG TGTAGGAGCA AAGAGAATCA
GAGAATTGTT CTCTCAGGCT CGAGAAAAGT CGCCAGCCAT CATCTTCATA GATGAGTTGG
ACGCCATCGG CGGAAAGCGT AATCCTAAGG ACCAGGCCTA TGCCAAGCAG ACCTTGAACC
AGTTGTTGGT GGAGTTGGAC GGTTTCTCAC AAACTCTGGG AATCATTATC ATCGGCGCTA
CCAATTTTCC TGAATCTTTG GACAAAGCTT TGACAAGACC AGGTCGTTTT GACAAGGAAG
TCATTGTAGA TTTGCCCGAT GTGAGAGGTC GTATCGATAT TTTGAAGCAC CACATGCAAA
ACGTAGAAAC TGCTGAAGAC GTAGATCCTT CTATTATTGC TCGTGGTACT CCAGGATTGA
GTGGTGCTGA GTTGATGAAC TTGGTCAACC AGGCCGCTGT TCACGCATCG CAATTGTCGG
CTCCTGCAGT TGATATGAAC CATTTCGAAT GGGCCAAAGA CAAGATCTTG ATGGGTGCAG
CCAAGAAAAA GATGGTTATC ACCGAAGAAT CGAGAATCAA CACAGCCTAC CATGAAGCTG
GACATGCCAT TATGGCCATG TATTCAAAGG GTGCAACTCC GTTATACAAA GCTACAATCT
TGCCTCGTGG TCGTGCCTTG GGTATCACCT TCCAATTGCC AGAAATGGAT AAGGTCGACA
TGAGCAAGAA GGAGTGTTTT GCCCGCTTGG ATGTTTGTAT GGGAGGAAAA ATTGCTGAAG
AAATGATCAA TGGTAAAGAA AATGTTACCA GTGGTTGTTC CAGCGATTTG GCAAATGCAA
CGTCCGTCGC ACGAGCTATG GTTACTTCCT ATGGTATGAG TGACGTCATA GGTCCCGTAA
AGTTGAGCGA CAACTGGGAA CTGTGGTCGT CTCAAATTCG TAATTTGGCT GATAACGAAG
TCCGCGACTT CTTGGTGACG TCTGAAAACA GAACCAGAAA GTTGTTGAGC GACAAACGTG
TAGAGTTGAA GAGATTGGCT GAAGGGTTGC TTGAGTACGA GACTTTGACT AGAGAAGAAA
TGGAAAAAAT CGTCAAGGGC GAGATCATCA ACAAGGAAAA GAGTATAAGC AATACCGTGA
TAAAATCGCC GAAAAGCTCA GAAACCAGAG ATGTCATCAA CGACCCTATA CCCGTCGAAG
CGTAAGCTCG GCAAACACAC TTGAACGAAA ATGAAAATGA TAGAAACGAA TTATTACGAT
TGAAATTATT ATTAGTACCT GATATTAAGA TAATTGATAT TGAAATATTT CATTGCTGGT
TAATAGCACA TGCAAGAGTC AATTCCTAGG GGGCGTTCCT ATAAGTCTTG TACTTATGTT
TTATCGTGAT TATATAATCA GGGGTATGGA ACTATCTACC AGTTGGTTCT ACGATGGTTT
ATGATTGCGA AATAATTGAC AATTCAGTCG TTGGTTGTAA CTGGGTGATT TTTCAGTTGA
CGGTTACCAC CTTTTTTGTA TATAAGGCTA GCTCTGCTAG TAAAGGAACA CCTGCAACGC
GATATAATAC ATAGCAAAGT AATACAGAGA GATCTGAAG
|
|---|
| Protein sequence | MNTLLRMAPV LSSARTSLAP RVMTNFRNLN SLKNLKNFST RSSLSSWKSS PSLTSLKSSR
FPRKSLNSVR NVSSTTVSLL QSQEQMANSD LNNTTAQAEF YRLLLAHNYP HIVIQRYETP
GIAASPECTA IYIEALNKIG KKGKAEQVAR SLATQNVASA GNVATGLPHG FGSRYEPVHV
IVSESLLTIL SKWMKWLIPV ALMTYGATNA FNYLVENGTI FKNSEVSDKS VDVSQSTVRF
SDVQGCDEAR AELEEIVDFL KDPSKFTGLG GKLPKGVLLT GPPGTGKTLL ARATAGEAGV
PFFFMSGSEF DELYVGVGAK RIRELFSQAR EKSPAIIFID ELDAIGGKRN PKDQAYAKQT
LNQLLVELDG FSQTLGIIII GATNFPESLD KALTRPGRFD KEVIVDLPDV RGRIDILKHH
MQNVETAEDV DPSIIARGTP GLSGAELMNL VNQAAVHASQ LSAPAVDMNH FEWAKDKILM
GAAKKKMVIT EESRINTAYH EAGHAIMAMY SKGATPLYKA TILPRGRALG ITFQLPEMDK
VDMSKKECFA RLDVCMGGKI AEEMINGKEN VTSGCSSDLA NATSVARAMV TSYGMSDVIG
PVKLSDNWEL WSSQIRNLAD NEVRDFLVTS ENRTRKLLSD KRVELKRLAE GLLEYETLTR
EEMEKIVKGE IINKEKSISN TVIKSPKSSE TRDVINDPIP VEA
|
|---|
| |