| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_86089 |
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| Symbol | AMD5 |
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| ID | 4851325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 1505607 |
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| End bp | 1507365 |
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| Gene Length | 1759 bp |
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| Protein Length | 556 aa |
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| Translation table | |
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| GC content | 42% |
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| IMG OID | 640393033 |
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| Product | amidase activity |
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| Protein accession | XP_001387519 |
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| Protein GI | 126274366 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00303647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.387343 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTACTG ACGATTGGAA AGTGCTTGCT GTCAAAGCCC AAAACATATA TGAAGACTCC
TTGAAATTGA CCTTGGAACT TTTTCCCTTC GATGACCCGG AGACTTTGAA AGTTTTCAAC
GGTCTTCCTT CGGCTAGAGG ACAGTCTGTT ACTGATTTCG GTAGTCCTGC GAAATTTCCG
ATTGAAGAGT ACTTGAAGAA ATTGCCCGAA AATGTCAAAG CTGTTACTGA AAAGGAGCCA
ATTGAACTTA TTCGTGACTT GAAAGCTGGC AAGATCACTG CTGTTGAAGT ATTGAAGTGC
TACTACCATG CAGCTATCTT TGCTTCAAGA TTAGTTAATT GTGTTCACGA ATTCTTACCG
GTTGAGAGTT TGGAAGCTGC TAAGAAGCTT GATGCTGATT TTTCCAAGTC GCTGCAATTG
CCCTTATTTG GTTTACCTGT CTCTATCAAA GAAATGATCA AATTCAAGGG CCGTCCCGTT
ACTCATGGCT CCCTTTGCTA TTTGGACAGA ATTGCTGATG ATCATGGAGA TATGGTCAAA
ATCTTATATT CCAATGGTGC TGTTCCATTT GTTAGAACTA CCAACCCTCA GTCTCTTATG
ATGCTTGAAT GTGAATCTCT TTCTCATGGC AGGACCGTTA ACCCATTCAA CAGTGACTTG
ACCTCTGGTG GTTCATCAGG TGGTGAAGGT GCCATCAATG GTATACATGC CTCTCCCCTT
GGATTCGGAA GTGATATTGG AGGAAGTATC AGATGTCCTT CAGCTTTCAA TGGCATCTGG
GGTATGAGAA CAACCGTTGG TAGATTGCCA TGTATGGACT ACTACTCGTG CCAGAGGGGT
TCAGAATCGA TTCTTTCCGT CACTGGACCA TTGACGAGGT CATTGGGTTT ATTGGAATTA
TCTATAAAGA CAATTATCGA TTCAAAACCC TGGCTTATCG ATCCATCTAC TTCTGCAATC
GAGTGGAAGA CTCCAAAGTT CGGTAAGAAG ATAAGAATCG GGATCCTATC TCATGACGGT
ATTTGTACTC CACAACCACC TATTGCTAGG GCACTTAAGG AAGTTAAGGA AAAGCTTAGC
AAACTTCCTA ATGTGGAGTT GGTCGAATTC AAACCTTATG ACCATAGTAG GTCATTTGCT
ATTCTTGGCC ATTTGTACTT CGAAGATGGT GGAGCAGATA CCAGAGCTAC TTTGGGTACT
GGTGAACCTC TTCTTGAACA AACAAAATGG GCCATTGAGG GAGCAAAGGA ATTGACTGTA
CATGAAATCT GGAAGTGGAA CTTGGAAAAG CAGGCATATA GAAAGGAATA CCTTCAGCAC
TGGTTGTCTT ACAACAATGA CGATGGAGAA GAATTGGACG GGGTTATAGC TCCAGTTTTT
GCTGGTCCAG CGGCCAAACA CAGAACCGCA AAGTACTGGG GATACACAGC TCAGTGGAAC
TGTGTGGACT ATCCAGTATT GGTTTTCCCA GTCACCAAAG TTGATCCAGA ACTCGATCAG
CCAGTTAAGG ATTACACACC CTTAAACGAC CATGATAAGT ATAACTACGA GGCATATGAT
TCTCCTGAGA GTTTTCTTAA TGCTCCTGTC AACCTAGGTG TGGTTGGCTT GAGAAATACT
GAGGAGAAGT TGATTGAAAT AGGAAAAGTG TTGAAGTCTA TCTTGGATTG AAATAGTGGT
ATGATTTGAA ATCTGAAAAA TCTCTTAAGT AACAAAATTT GTTTTAATAA TTATTCGATT
TGAATTGTTT CTCATATGG
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| Protein sequence | MLTDDWKVLA VKAQNIYEDS LKLTLELFPF DDPETLKVFN GLPSARGQSV TDFGSPAKFP
IEEYLKKLPE NVKAVTEKEP IELIRDLKAG KITAVEVLKC YYHAAIFASR LVNCVHEFLP
VESLEAAKKL DADFSKSLQL PLFGLPVSIK EMIKFKGRPV THGSLCYLDR IADDHGDMVK
ILYSNGAVPF VRTTNPQSLM MLECESLSHG RTVNPFNSDL TSGGSSGGEG AINGIHASPL
GFGSDIGGSI RCPSAFNGIW GMRTTVGRLP CMDYYSCQRG SESILSVTGP LTRSLGLLEL
SIKTIIDSKP WLIDPSTSAI EWKTPKFGKK IRIGILSHDG ICTPQPPIAR ALKEVKEKLS
KLPNVELVEF KPYDHSRSFA ILGHLYFEDG GADTRATLGT GEPLLEQTKW AIEGAKELTV
HEIWKWNLEK QAYRKEYLQH WLSYNNDDGE ELDGVIAPVF AGPAAKHRTA KYWGYTAQWN
CVDYPVLVFP VTKVDPELDQ PVKDYTPLND HDKYNYEAYD SPESFLNAPV NLGVVGLRNT
EEKLIEIGKV LKSILD
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