| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_66424 |
|---|
| Symbol | RGA1 |
|---|
| ID | 4851285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 1402504 |
|---|
| End bp | 1406750 |
|---|
| Gene Length | 4247 bp |
|---|
| Protein Length | 1191 aa |
|---|
| Translation table | |
|---|
| GC content | 46% |
|---|
| IMG OID | 640392993 |
|---|
| Product | Rho-type GTPase-activating protein |
|---|
| Protein accession | XP_001387915 |
|---|
| Protein GI | 126274271 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATTAGTTCTC GTTTTCTATA ATAATTATAT CGGAGGATTG TTTCTCGTTC TGTTGGCCCT
GTGCACTGTT TTATTCTGGT ATTGTGCATT TGTACTCGAG CTCCCAGGAT TGTGCACTAA
TACCACGTCA CTTTTCGTCC AGCTCTAACG TGCAGAGTCT AGCTACAAGA TACATTCGGC
GATAGTGACA ACAGCTGAAC GGCTCACACT ATAGCTATAA CCATCAGATC CATCCATTTG
TATCTGATTG TAGCGATTCA TCGACATTTT CCCAGTTGAG TAATTATCGT GAATAATACT
TTATTTTATA GTAATTATTC TGAAAAATCT CGACAAGAGA AGGAACATCA ACACTCTCGT
CAACATCACT ACAACACCGC TACAACATCG CTACACCATC GCTACACCGT CACTTCAATA
GCCGCAATAC GGACAATACT ATCACTACAA AATTGCTACA GAATCGCGTT CATCAATAGT
CAGCACCGCC GTAATCACCA ATTCCCACCA TCACTACATT AGTTACTATA TCATGACAGA
CATATCCATA ACTCACGAGA TTGCCCCGGC TCCGCCTCCA GAGACCTTCA GACAGCACGA
CTCTCAGCCA TGCAAGAAAT GCAACCAGCC CATCTACGAG GGCCACGCCT ACGAGTTGGG
AGACGACAGA TGGCATTTGG ACTGTTTCAA GTGTTCCAAG TGTGACTCGT CGTTGGGCTG
CAATTCCAAC TTCTTGGTGT TGGGGAATGG AAACTTGATC TGCTCCAACT GCTCCTACAG
CTGTAAGCAG TGTGGCAAGA AGATCGATGA CTTGGCCATC TTGACGGGAG ACCAGGCCTA
CTGTTCCAAC TGCTTCAAGT GCCGTTCATG CAAGATGAAG ATAGAAGATT TGCGCTACGC
CCGAACCTCT AAAGGTCTTT TCTGTATGGA TTGCCACGAA AAGCTCATGG CAAAAAAGAA
GAAGTATGAC GCTAAGAAGA AACAACAACA GGCTCAGCTC CAGCGAGAGA AAGAAGAACG
TGAACAACGT GAACGTGAGA TGCAGTTGGA TGAATCCAGA AAGAGCAACA ACTCGTCCAG
AAACAGCATT CTTCAGAGCT ATCTTTCTTC AAATGGGTCC AACACGAATC TTGGGGAAGC
CCCTTCTTCT ACTACCACCA CCTCCTCCAC AGCTGCTAAC AATACGACCA TCACCAATAC
GACTACAGCT ACGTCTTCTA CCGCTTCGGA TATATATTCG CAGACAAACA AGTCCAGCAA
TTCTGTCTTG CTGAAAAAGA AGATTCTTCC AAATCCCCCA ACTGTTTCTG GTGCTACTTC
TGGAGCTACT TCTGCTACAG CTACACGAGG CTCTTCTGAT TACTCTCACT ACAAAGAACC
GTTGGTTTCT CCTCAGAAAA CGAGAGAGCT AACCACGTTG GTGCCTCCAG ATAACGACTT
CTCTATCGAG GAAGTGGTCA ACGACAGCGA TGACGACGAC AACATTGCCA ATAGACCTTC
GCTCAGACCT CAAAAGGATG TAGCCTCCTC CTCGCTTCTT CACCGTAGAT CACCTCCTCC
TTTCCTTGAT GATGAAGGCA CTCAACTTCA GAAACTCAGT ACCCCACCCT TCAACACACC
TCCTTCTCAC TCGAGACAGG ACTCCAAGGC GTCGGAATAT ACTGATGCAG CATCTTCCAA
TGTAGGTGCG CCTGGAAGCG ACATCCCCAC GCTGAAAGAT GCGGAGTTAC AGCCAGCTGT
AGACATAATA GTAAAAGATT CTGAACAGAG GACGCCGGAA ATGAGTAATA CGCTTCCTGT
TTCGCCCTCT TTCAAGCCAA AGAACCTCAT GATACTATCG CCCAACCAGT ACCACGACCA
CGAGTTCCAT ACCACCAACA TCGAATCGGA GCCACTGAAT GCGGACGTAA AATCGGACGC
CAAATCTGGC TCTCCAGCTC CAACAAATTC TACGGGTAGC ATCAAGTCGA ATACGCTTTC
AGCGCTCGGA GACGATCCCC GGGCCAGATC TGGTTGCACC TCTCCATTTG CAAAGGCCAA
CAGACAGGCT CGTGTTGTAG AAACGAATGA TTACATAGAA ACAGAAGGAT TGGAAGACGT
TGACTACAAT ACCATTCTAC TGACTCCTCA GAAGAGGACG CCTTCTAGCG TGACCTCGCC
TCCTCCTAAA GCACCTCTTC CTAGTACTCC TACCAGAAGA GATGACAACC CTAAGGGCTT
GGGCCTCGAA GGAATTAACT ATGGAGATGG CCAGGATGAA CAACGTAGCT ATTTGAAGCA
GCAACAGGAA AAGAGACATC GGGCCAGTGA CGACGATATG ACCCTCACCC CTTCACATAA
TGCCATCCAC CACTCGCCCA GAAAAAGCTA TGGATCCAAC GATGCTATAG ACGGACTCGA
ACAGTCTGGA ACGTCAACGT TGCTGAGAAT GAATACGCTT ATCAAGACCC CAAAACTCAG
CTTGAAGCAC AAACGTTCAA TTTCTGGCGG CAGCACTTCA TCTGGCAAGT TTGGATTCTT
CAAGTCCAAC AAGGAGGAAA AGGATAAGGA AGGAAAGGGC CATTCTCGTC ATGTGTCGGA
AGGATCTGTG TCCAACGGAG CAGCCTATAC TACACCTCCA TTGCCTATAT CTACTCCGCA
GTCTTACGGT GCCACTTTCA GAGAACACAC ACGTTCGACT TCTGATACCC CGTTTTTGAC
TAGTCTCGAT AGCCATCACG ATGAAAACGA GAACTTCGAT CTCAAAACCT TGAAATTCGA
AATCTCCCAG TTATCAGGAC AGAAGTCGTC GTTGAACGGA GAATGCCGCA GATTGGCAAC
GGAAAAGTCC AAGTTGAATG AACAGGTCAA ATCGCTCAAC GCTAAAGTTC AGAACGAGAC
TTCTCGTTTG AACAAGTTAC TCAGTGATAT CGATGAGCTT GAAGCTCAGA AACTTAAATT
GGCGGAGTAC AACAACCAGT TGCTCGACCA GAATCGTAAA CTAGAACTGT CACTAGATCA
GAATCGTAAG CTTGAAACGC CGTCAGATTC ATATTCGTCA TCATACACCA GAGTTTCTAA
CGATACCGAG TACATTCCAA ACAATACCAC CATCATTGGT GGAGTTCACT TCACGGAACT
TCCTGACGAG TCTGCTGAGA CAAACAGAGC TACTAGACTC AAATTCTGGA GAAGAGCAAA
GAACGCCGCT CCTAATCTCG TTCAAACAAG CCTGCCAGGA GGTCAATCTG CTTCTTCTCA
ACCTTTAGCA GGCTCCAACA GTTCACAACT CCTGGGCCAA TCTGGCTATC TGTACAATGG
GTCAAGCAAG GTCAGCCAGA ACTACTCTTC TCAGGCTATC AGATTGCCGA ACCATAGCCT
GAACGGACTG GTGGATGGTG CTATCAACCA GGACAAAAAG AGGTTTACTC GGTCTAGATC
TACCAACATC ATCGACACGC TTTTGTCGAA CGGAGATTCT GAGACTCCCA ATGTTCCCTT
ATTCTCTTCG ACTATTCAAC AGCGTGCCGA TTTTGAAAAT GTAGAGGTAC CGTTGATCAT
CACCAAGTGT TTGGTAGAAG TGGAAATGAG AGGTTTGGAC ATGGAGGGTA TATACAGAAT
CTCCGGAGGC AACTCGGCCA TTGTAGCTAT AGAGAATGCC TTTTCTAACA TCGGAGCTAG
TCCTGCTCTG GACGAAAAGC AGCTTCTCAA GCTTCAGGAG GCCATGAGTG GAGACATAAA
TGCTGTGACT TCTGCTTTAA AGAGATATTT CCGTAAGCTA CCTGATCCTT TGATTCCATA
TGCCATCTAT GATGATTTCA TTAAAGTCTC GTCTGGAGGC AACACCAAGG TAGAAAAAAA
GGTAGCAGAC TTGAAGAAGG TGGCCAGCAA ATTGCCCAAC GCGAACAAGC ACACGTTGTA
CCTCTTGTGT AAGCACTTGT CCTTGGTGAG TTCATTTGCC AATTTGAACA GAATGAACTA
CAAGAACTTG TCTGTGGTGT TTGCTCCTAC CATTGCCAGA GATGAGACGG GCCAGAAGGA
GATGATAGAC ATGGGCCACA GAAATGAGAC CACCGAGCTT ATGTTGAACC ACTGGGAGAA
GGTGTTTGAC GATATGATCG AGGACTGAGA TACGATATAT AAGCAAATTT TGATTACGAA
TTTTATTAGA TAATGTAATA AATAGTCGGA TAAGAATATG TACAGAGAGT GACTTTTATA
AGAATTCAGT ATTCTCAGTA TGTGAAAATG CATAAGTTAT ATATGAC
|
|---|
| Protein sequence | MTDISITHEI APAPPPETFR QHDSQPCKKC NQPIYEGHAY ELGDDRWHLD CFKCSKCDSS
LGCNSNFLVL GNGNLICSNC SYSCKQCGKK IDDLAILTGD QAYCSNCFKC RSCKMKIEDL
RYARTSKGLF CMDCHEKLMA KKKKYDAKKK QQQAQLQREK EEREQREREM QLDESRKSNN
SSRNSILQSY LSSNGSNTNL GEAPSSTTTT SSTAANNTTI TNTTTATSST ASDIYSQTNK
SSNSVLLKKK ILPNPPTVSG ATSGATSATA TRGSSDYSHY KEPLVSPQKT RELTTLVPPD
NDFSIEEVVN DSDDDDNIAN RPSLRPQKDV ASSSLLHRRS PPPFLDDEGT QLQKLSTPPF
NTPPSHSRQD SKASEYTDAA SSNVGAPGSD IPTLKDAELQ PAVDIIVKDS EQRTPEMSNT
LPVSPSFKPK NLMILSPNQY HDHEFHTTNI ESEPLNADVK SDAKSGSPAP TNSTGSIKSN
TLSALGDDPR ARSGCTSPFA KANRQARVVE TNDYIETEGL EDVDYNTILL TPQKRTPSSV
TSPPPKAPLP STPTRRDDNP KGLGLEGINY GDGQDEQRSY LKQQQEKRHR ASDDDMTLTP
SHNAIHHSPR KSYGSNDAID GLEQSGTSTL LRMNTLIKTP KLSLKHKRSI SGGSTSSGKF
GFFKSNKEEK DKEGKGHSRH VSEGSVSNGA AYTTPPLPIS TPQSYGATFR EHTRSTSDTP
FLTSLDSHHD ENENFDLKTL KFEISQLSGQ KSSLNGECRR LATEKSKLNE QVKSLNAKVQ
NETSRLNKLL SDIDELEAQK LKLAEYNNQL LDQNRKLELS LDQNRKLETP SDSYSSSYTR
VSNDTEYIPN NTTIIGGVHF TELPDESAET NRATRLKFWR RAKNAAPNLV QTSLPGGQSA
SSQPLAGSNS SQLLGQSGYL YNGSSKVSQN YSSQAIRLPN HSLNGLVDGA INQDKKRFTR
SRSTNIIDTL LSNGDSETPN VPLFSSTIQQ RADFENVEVP LIITKCLVEV EMRGLDMEGI
YRISGGNSAI VAIENAFSNI GASPALDEKQ LLKLQEAMSG DINAVTSALK RYFRKLPDPL
IPYAIYDDFI KVSSGGNTKV EKKVADLKKV ASKLPNANKH TLYLLCKHLS LVSSFANLNR
MNYKNLSVVF APTIARDETG QKEMIDMGHR NETTELMLNH WEKVFDDMIE D
|
|---|
| |