| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_53653 |
|---|
| Symbol | RAD54 |
|---|
| ID | 4851950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | + |
|---|
| Start bp | 3280485 |
|---|
| End bp | 3283013 |
|---|
| Gene Length | 2529 bp |
|---|
| Protein Length | 821 aa |
|---|
| Translation table | |
|---|
| GC content | 45% |
|---|
| IMG OID | 640393658 |
|---|
| Product | protein required for X-ray damage repair, mitotic recombination, and full meiotic recombination. mRNA increases in meiosis |
|---|
| Protein accession | XP_001386950 |
|---|
| Protein GI | 126276118 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.194325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.270019 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGAA AGCCCCTTAA AGAATTCACC ACCCCCCTTG GTTCGGGTGC TGGAGTTCCC
AAACACAAGA GACCTCCACG CGTTACAGAC TCTGCCACGC GACTAGCAAG ACCATTCCAG
GTTCCATTTG CCAACCGAAA ACAGGACGTC GGAACCGGTG CCACGGAGTC TACAAGAGGG
TTACCGCTTC GAAACGCTCG TGCAAAAGTA AAGAGTTATC TGATTCTAGA CCCTGACTCA
GTAGACGGAA ACGAACTCGA ACTAGACTTT GCAGTAGATG AGAACGGAAA TGCAATAAAA
ACACGTAGAT TTGGTTCCTT GTTACCACGA GCCATGCTCC AAAATGGTGG AATAGCTAAG
AACGAAGATA CTCTCCGAAG GACGTTCCTG GTGCCGTTTT CGAAAGACAA TGCCAAACGG
GAACAGTTTG CTAATCGTGG CCCACCACCA CCATTGGGTA CCAAAGTAGT TCCTATAATA
CCTCCAAGGG CTCTTCACGA CCCCATGAGT GAGTTTGCTA TTGTCTTATA TGATCCCACT
GTGGATGTAA TTCCGAAAAT TGAAGAAGAG AAAGAAGAAT CGTCTCCGAC ACCAGAGGAA
GAGGATAAAG AAAACATTCC CGAGGGCCCT GTAACAAAAA AGAGAAAGAC CCACAGGTCG
CTTGCTGAGA TACTTGGTAT AGTGACTAAC CCAGAGGAAG CGTTGGCGAA GTATCCTGAT
GTGCCTGTAG TTATAGACCC CAAGTTGGCG AAGATCTTAC GGCCCCATCA GATCGCAGGG
GTCAAATTCT TATATAGATG TACAGCTGGA CTCATCGATG CTCGAGCTAA AGGGTGCATC
ATGGCAGATG AGATGGGATT GGGTAAGACG TTGCAGTGCA TAGCGTTGAT GTGGACGTTG
TTGAAGCAGA GTCCTCGAGG CAAAAGAACT ATAGAAAAGT GTATTATAGT GTGTCCCTCT
TCGTTGGTGC GAAACTGGGC CAACGAAATC ATAAAATGGT TGGGTGAAGG TGTTTTGACT
CCATTGGCAG TAGATGGCAA GAGCACCAAG AACAGCGAGT TGGGAGGAGC CCTTCAACAG
TGGTCTGTGG CTCGAGGAAG AAACATCGTC CGACCAGTTC TTATCATTTC TTATGAGACG
TTAAGGCGTA ACGTAGACAA GTTGGCTGGT ACAGAAGTCG GATTGATGCT TGCAGATGAA
GGTCATCGTC TCAAGAATGG TGATTCGCTT ACCTTTACAG CATTGAATTC ATTGCGTTGC
GAAAGAAGAG TCATTTTGTC TGGTACACCC ATTCAGAACG ATTTATCTGA GTATTTTTCA
CTCTTGAACT TTGCCAACCC AGGATATTTG GGTACCAGAA ACGACTTCAA GAAGAATTTT
GAGAATAAGA TCTTGAAAGG AAGAGATGCC ATAGCTACAG ACAAAGAAAG AGAGGTTGGC
GACGAAAAGT TAGCGGAACT CTCTCAGCTT GTATCTAAGT TCATTATCCG TAGAACTAAC
GATATATTGT CCAAGTACCT TCCTGTCAAA TACGAGTATG TGTTGTTTAC AGGGCTATCT
CCAATGCAGA AAGACCTCTA CAGGCACTTT ATTACGTCTC CCGAGATCAA GAAGTTATTG
AAAGGTGTGG GTTCACAGCC GTTGAAAGCA ATTGGAATGT TGAAGAAGTT GTGCAACCAT
CCAGATTTAT TGAACTTGCC CGATGATTTT GAAGGCAGTG AAAAATTCAT TCCCGAAGAT
TATTGCTCTT CCATTGGTAG TGGAGGCAGG AATAGAGAGG TCCAGTCGTG GTACAGTGGT
AAGTTCATGA TCTTGGAACG GTTCTTGTAC CAAATTCGAA GCCAAACTAA CGATAAGATT
GTGTTGATTT CGAATTACAC GCAGACGTTG GACTTGATTG AAAGGATGTG TAGACACAAG
AAGTATGGTT CGCTCCGTTT GGATGGGACA TTGAGCATCA ATAAGAGACA GAAGTTAGTG
GATAAGTTCA ACGATCCAGA AGGTAATGAA TTCATATTTC TTTTGTCATC CAAGGCCGGA
GGGTGTGGTA TCAACTTAAT TGGAGCCAAC AGATTGATCT TGATGGATCC AGACTGGAAC
CCTGCCGCTG ATCAACAGGC CCTCGCGAGA GTATGGAGAG ACGGACAAAA GAAGGATTGT
TTTATTTACA GATTCATCTC TACTGGTACT ATAGAAGAGA AGATCTTCCA ACGGCAGTCG
ATGAAGATGT CGTTGTCGAG TTGTGTAGTT GATGAGAAGG AAGATGTGGA GCGTCTTTTC
AGCGCTGACA ATTTGCGGCA ATTGTTCATG TACCAGCCAG ACACCAACTG TGATACCCAC
GATACCTACA ACTGTAAGAG GTGTACCAAG GATGGACAGA AGCAGAAGGC CCCGGCCATG
CTATATGGTG ACGCCACTAC GTGGAACCAT ATTAACCATG CTAACTTGGC TGGAAATGAA
GACCTTCTAG TAGCCAACGA AGCTGGGTTT GAAGATATTA CCTTTGCGTT GCAATATATT
TCACATTGA
|
|---|
| Protein sequence | MARKPLKEFT TPLGSGAGVP KHKRPPRVTD SATRLARPFQ VPFANRKQDS TRGLPLRNAR
AKVKSYLILD PDSNGNAIKT RRFGSLLPRA MLQNGGIAKN EDTLRRTFLV PFSKDNAKRE
QFANRGPPPP LGTKVVPIIP PRALHDPMSE FAIVLYDPTV DVIPKIEEEK EESSPTPEEE
DKENIPEGPV TKKRKTHRSL AEILGIVTNP EEALAKYPDV PVVIDPKLAK ILRPHQIAGV
KFLYRCTAGL IDARAKGCIM ADEMGLGKTL QCIALMWTLL KQSPRGKRTI EKCIIVCPSS
LVRNWANEII KWLGEGVLTP LAVDGKSTKN SELGGALQQW SVARGRNIVR PVLIISYETL
RRNVDKLAGT EVGLMLADEG HRLKNGDSLT FTALNSLRCE RRVILSGTPI QNDLSEYFSL
LNFANPGYLG TRNDFKKNFE NKILKGRDAI ATDKEREVGD EKLAELSQLV SKFIIRRTND
ILSKYLPVKY EYVLFTGLSP MQKDLYRHFI TSPEIKKLLK GVGSQPLKAI GMLKKLCNHP
DLLNLPDDFE GSEKFIPEDY CSSIGSGGRN REVQSWYSGK FMILERFLYQ IRSQTNDKIV
LISNYTQTLD LIERMCRHKK YGSLRLDGTL SINKRQKLVD KFNDPEGNEF IFLLSSKAGG
CGINLIGANR LILMDPDWNP AADQQALARV WRDGQKKDCF IYRFISTGTI EEKIFQRQSM
KMSLSSCVVD EKEDVERLFS ADNLRQLFMY QPDTNCDTHD TYNCKRCTKD GQKQKAPAML
YGDATTWNHI NHANLAGNED LLVANEAGFE DITFALQYIS H
|
|---|
| |