| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_52759 |
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| Symbol | TIM50 |
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| ID | 4851071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 871166 |
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| End bp | 872581 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | |
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| GC content | 46% |
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| IMG OID | 640392779 |
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| Product | mitochondrial inner membrane protein required for protein import |
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| Protein accession | XP_001387397 |
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| Protein GI | 126274057 |
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| COG category | [K] Transcription |
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| COG ID | [COG5190] TFIIF-interacting CTD phosphatases, including NLI-interacting factor |
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| TIGRFAM ID | [TIGR02251] Dullard-like phosphatase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.581511 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTTC GTAGTCTTGT GGCCAGAAGA CTCGCACAAA TGCCCAGTGT TTATGCTGTT
TCTGCTGCTG CTTCTGTTTC AAGGACTGTT TCTCGCATAG GACCAGTTTC GTTTTACTCT
ACCAACAAGA CGGAAAAGAA GACTGAAAAA CCTCAGAGCA TTTTAACAGA CGACTTGCTT
GCCAAAGCGG GCTTTGAAGA CATCCCCGAA AAGGTTGAAG AAACAGAAAA CGGAGCCAGT
GGCGAAAGCG ACGGTTCTTC CGAACAAGGC CCACGTAGAA GAAGAAAGAG AGCTCAGACT
TCAAAAGACT TGAAGCGTGA AAGAATGGCC AACTACTTCT ACTTGCTGAC TTTCGCTGGT
GCCATTCTTG GTGTAGGCTA TTTATGCAGA GACTGGGACT CAGAAGAAGA GCGCAAAGCT
CTCGAGGCTC AGGAAGTAGA TAACGGCTAC ACTCCTGGTT TGATGTATGC TCGTTTGAAC
AAGAGATTGT CTTCTTTGTT TACGTTCTTT TCTGAACCTG CTTTTGAAGA CTTGTTGCCT
CCTCCAGCTC CTGAAGCTTA TCGTAGACCC TTGACATTGG TATTGTCATT GGACGACTTG
TTGATTCACT CGAACTGGGA TACCAAGAAT GGCTGGAGAA CCGCCAAGAG ACCAGGCTTG
GACTACTTCT TGGGCTACTT GTCGCAGTAC TACGAGATCG TCATCTTTGG ATCTAACTAC
CAGATGTACT CCGAGAAAAC AGTTCTCAAG TTAGACCCAA TGCACGCATA CGTTTCCTAT
GCACTTTTCA GGGAGGCTTG TCGCTACAAG GACGGAAAGT TGATCAAGGA CTTGTCGTTG
TTGAACCGTG ACTTGGGCAA GACTGTCATT ATTGACGTTG AGCCCGAAAG TGTCTCTGCT
CAACCAGAAA ATGCCTTGAT TGTAAAGCCT TGGGACGGTA AGTCGGACGA CTACTTGATC
CAGATGATCC CCTTCTTGGA ATACTTGGCT ACCCAGCCAG TCAAGGACGT CAGACCTATT
TTAAACTCTT TCTCTGACAA GAGTAACATT GTTGAAGAAT TTGCTCAAAG AGAAAGAAAG
TTAAGAGAAC AATGGGCTCA TGACCACAAA CGTAGCGACT TGCCAAATGC TGGTGACTTC
ATTGGTAAGT TGTTGGGCTT GCCTACCGTG AGAAAAGAAC AAAAGATGCC ATTGGACATC
ATCAGAGAAC ACGGTCAGTT CCAATATGAG CAGATGCAAA AGTACATGCG TGAAAACGCC
CAGATCTTCT TGGAAGAGGA AAAGAAGAAC AAGGAAGAGT TCGGAAAGGT CTCGTTGAAC
CAGTTGCTTA CTGAGGGTGC TCCAAAGCCC GAGGACATCA TGAAGGCACA GGCTGAAAGG
GTCAAGAAAG AACAAGAAGC CGCAGCTGCT CAATAA
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| Protein sequence | MSVRSLVARR LAQMPSVYAV SAAASVSRTV SRIGPVSFYS TNKTEKKTEK PQSILTDDLL
AKAGFEDIPE KVEETENGAS GESDGSSEQG PRRRRKRAQT SKDLKRERMA NYFYLLTFAG
AILGVGYLCR DWDSEEERKA LEAQEVDNGY TPGLMYARLN KRLSSLFTFF SEPAFEDLLP
PPAPEAYRRP LTLVLSLDDL LIHSNWDTKN GWRTAKRPGL DYFLGYLSQY YEIVIFGSNY
QMYSEKTVLK LDPMHAYVSY ALFREACRYK DGKLIKDLSL LNRDLGKTVI IDVEPESVSA
QPENALIVKP WDGKSDDYLI QMIPFLEYLA TQPVKDVRPI LNSFSDKSNI VEEFAQRERK
LREQWAHDHK RSDLPNAGDF IGKLLGLPTV RKEQKMPLDI IREHGQFQYE QMQKYMRENA
QIFLEEEKKN KEEFGKVSLN QLLTEGAPKP EDIMKAQAER VKKEQEAAAA Q
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