| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_52420 |
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| Symbol | TRF4 |
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| ID | 4851161 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 1083392 |
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| End bp | 1085290 |
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| Gene Length | 1899 bp |
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| Protein Length | 605 aa |
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| Translation table | |
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| GC content | 41% |
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| IMG OID | 640392869 |
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| Product | topoisomerase I-related protein |
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| Protein accession | XP_001387852 |
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| Protein GI | 126274147 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG5260] DNA polymerase sigma |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGGCA AAAGGAAAAG AGATATCACG CCTAAACTCA AGTCCAAGAA GCAGAGAAAG
AGACAAAAGA CGGGAAAAGG TGATGTTTTT ATCCCTGCAC AGAACAACTT CCACCATCTC
CCAGAGGAAG ACTCTGATTC CGATTCTAGC GTGATCTTTG ACTACGACAG TCGGGAAAAG
AGTACTAAGG GAGAGATCGT CCTTGTAGAG CTGGATGATG AGAGTGAGAA ATCTGACGTA
AAAGTGACAA ATCAAGATGA ATCGGTAATT GTAGCTATAT CTGATGATGA TGATGATAAT
AATGATGATG AAAATGAAAA TGAACAAGAC GGCAATGTAA AGGTACTGAA AACCGAGAAA
AACGAGCTTG CAAAGAATGA AGATTTCATA GGTTTCGGCT TCCTGTCTTC AGAAGAAGAG
AACAATATAG AAGATGAAGA TTTCTCCGAC GATGGAGTGA TGAGTGCTGA TGAACATGGT
AAAGTAACTG CAAAAAAGGC CTCCTCTTCG TTTCCGTGGT TAAAGGACCA CGATCATTCT
GAGCAGAAGG AGATGGCAGA TTGGTTGACT ATGGAAATGA AGGATTTTGT CAACTATATA
TCACCTTCCA GTGAGGAAAT CAGAACGAGA AATAGACTCA TCAACAAGTT GAAGTCCAGC
ATCAGTCTGT ACTGGCCCGA AACGGAAACT CACGTATTTG GGTCTTCAGC TACAGACTTG
TACTTACCAG GTTCTGATAT CGACATAGTA ATTGTTTCTC GGACCGGAGA CTATGAAAAC
AGATCTAGAT TGTATCAATT GTCTTCTTAC TTGAGACATA AGGGCCTTGC CAAAAACATG
GAAGTCATCG CTAAAGCAAA AGTGCCTATT ATCAAATTTG TAGATCCTGA GTCCAACGTC
AATATTGATG TGTCATTTGA AAGAAGAAAT GGAATAGAAG CAGCGAAAAA GATACGAAGA
TGGATGACTA CTACTCCAGG ATTACGTGAG TTGGTCCTTA TTATAAAACA GTTTTTGAGT
TCAAGAAGGC TTAACAATGT GCACAGTGGT GGATTGGGAG GCTATGCTAC TATTATCCTC
TGCTATCACT TTTTGATGAT GCATCCTCGT GTGTCCACAA ATCTGATCAA CATAACTGAC
AATCTTGGGG CTTTACTAAT CGAATTTTTT GAATTGTACG GCAGAAACTT TTCGTATGAT
AACTTGATCA TCTCGTTGGA TCCACGGTCT GACCTTCCCA GATATTTGTT GAAAAGAGAC
TACCCCCATT TGAACACCAA TAAGAACCCA TTCACTATAG TGGTACAAGA TCCTTCTGAT
GAAGACAACA ACATTACCAG ATCGTCATAC AACCTTCGAG ACTTGAAAAA AGCATTTGGA
GGAGCCTACC AGTTGCTAGT AGAAAAGTGT TACGTGCTTA ATGGCACATC CTACAAGAAT
AGACTAGGGG AGCTGATATT GGGAGACATC ATTAAGTACA GAGGCAAGGA AAGAGATTTC
AACGATGACA GACACAAAGT CATCAACGAT GCATTAATAA ATCATGAAAG TTCTGAAGAC
GAAAGTGATG GAGCGGACGG GAATGACAAA TACTACTATT CAGATATAAC CGTAGAAAGC
GACGATGAGC TTCAATTCGA AGTCGACGTA CCAAAGAAAG AATCGGCCAA GAAAGAGGCA
GAATCCGCTG TGCATACCAA AAAGCAAGTT GAAGAGATTC TTGGCTTGAA AGGTGATAAC
CCTGAAGAAG ATGAAGAAGA AGGAGAGGGT GATTATAGTC CTCCAGATAC CACTAAGGAA
GACGAAGAAG AAGATGCTAC GGATATGAAA AGGTCTAAGA GCAATCTTGA CAAGGATGTT
CGTCGTGATT ATTGGAGGCA GAAGGGATTA GAATTGTAG
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| Protein sequence | MTGKRKRDIT PKLKSKKQRK RQKTGKGDVF IPAQNNFHHL PEEDSDSDSS VIFDYDSREK
STKGEIVLVE LDDENESVIV AISDDDDDNN DDENENEQDG NVKVLKTEKN ELAKNEDFIG
FGFLSSEEEN NIEDEDFSDD GVMSADEHGK VTAKKASSSF PWLKDHDHSE QKEMADWLTM
EMKDFVNYIS PSSEEIRTRN RLINKLKSSI SLYWPETETH VFGSSATDLY LPGSDIDIVI
VSRTGDYENR SRLYQLSSYL RHKGLAKNME VIAKAKVPII KFVDPESNVN IDVSFERRNG
IEAAKKIRRW MTTTPGLREL VLIIKQFLSS RRLNNVHSGG LGGYATIILC YHFLMMHPRV
STNLINITDN LGALLIEFFE LYGRNFSYDN LIISLDPRSD LPRYLLKRDY PHLNTNKNPF
TIVVQDPSDE DNNITRSSYN LRDLKKAFGG AYQLLVEKCY VLNGTSYKNR LGELILGDII
KYRGKERDFN DDRHKVINDA LINHESSEDE SDGADGNDKY YYSDITVESD DELQFEKEAE
SAVHTKKQVE EILGLKGDNP EEDEEEGEDT TKEDEEEDAT DMKRSKSNLD KDVRRDYWRQ
KGLEL
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