| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_52201 |
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| Symbol | SLY1 |
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| ID | 4850839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 196817 |
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| End bp | 198754 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | |
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| GC content | 47% |
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| IMG OID | 640392547 |
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| Product | Vesicle trafficking protein Sly1 (Sec1 family) |
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| Protein accession | XP_001387277 |
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| Protein GI | 126273652 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5158] Proteins involved in synaptic transmission and general secretion, Sec1 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0194128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.444836 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTAG TAGACACGTC CTCGTTGCGA GGAAGACAGA TAGCCACGTT GGAGCGAATG
CTCCATCTCA ACAAAGATGG CTCTCCCGAC TTGACCCTAG CCTCCAAGAA CGAGGATATC
ATCTGGAAAG TGCTCGTTTT GGATACGAAG TCGAGAGCGG TACTTTCGTC AGTTTTGCGT
GTGAACGACT TGCTTCGTTG TGGGATTACT GTCCATTCAT TGATTTCGCA AAAGAGAACG
GCCTTACCAG ATGTACCAGT GATCTATTTT GTCGAGCCCA ACATCGACAA CGTCCTCCAG
ATCATTGACG ACTTAGAAAG CGACAAGTAC GACAAATTCT ATGTCAACTT CACCTCTCTG
ATCAACCGTG AGCTTCTCGA GGAGTTTGCG AAAAAAGTAT CGATCTCAGG CAGACTGTTT
CGTATCAAAC AAGTCTACGA TCAGTACCTA GACTTCATAG TCACCGAGCC CAACTTGTTT
TCGCTCGACT TCAAGGATAT CTTCACGCAG TTCAACAATG CGGGCACCGA CGAAGACACC
ATCCATAGAC TTGTAGACCA AATTGCCCTG GGCTTATTGC TGACGATAAT CACCCAGGAG
AACGTTCCAG TTATCCGAGC TCAACAAGGA GGGCCAGCTG AGTTTGTAGC CACCCAGTTG
GACTTGAAGC TCCGTGACTA TCTCAGTAAT TCGCGCAGCT CTCTGTCGCT GGCCCAACTG
ATTCAACAAA GACCGGTGTT GATCTTGCTC GACAGAAACA TCGACTTGGC CTCTATGCTA
GCCCACTCGT GGATCTACCA GTGTATGGTG AGTGATGTCT TTTCCTTGCA GAGAAACACC
ATCCGCATCC ACAAATACAA GGAAAACGAG TCGACACCGG AGTTCAAGAA CTACGATGTT
GATCCTCGAG ACTTTTTCTG GAACAAGTAC TCGCAATTAC CATTTCCAGA CGTAGTAGAA
AGTGCCGACA TCGAATTAAA CGCCTACAAA ACCGAAGCCA AAGAGCTCAC AAACAAAACA
GGTATTACTT CGCTCACCGA TATTGATCCC AACTCCAACG ACACCGCCAA CATGCAGCAG
GCGTTGGAGA AGTTGCCAGA GCTCACAGCC AGAAAGACTA CCTTGGATAT GCACATGGAT
ATCTTGGCTG CGTTGATCAA CGAATTGCAA GCAAAGAGCT TGGACAAGTT CTTTGAAATC
GAACAGAATG CCAGCGACCC CAAGATTGAG AGCGAGTTCT TGGAGTTGTT GACGTCTCTG
GCACAGAGAG ACAATGCACA GGATAAGTTG AGAACATTCC TTATACTAGT GCTACTTGTA
GACTTGCCCA AACAGTATAT TACAAAAGTA AGAAACGTCT TTGTCGACAA GTACCCAACC
ATAAATTTGG CATCCCTTGA CTACGTGCTC AAGTTCAAAG AGCATGCTAA GTTAACCAAC
ATCTCGTCGT TGAACGACAC CTCCACACAG AACTCATATT CCAACTCAGC CAATAACAAC
ACCAATACCT CTGCATTGTT GAGCGGTTTG TCGTCCAAGT TGTATGGCTT GACGGAAGGC
AAGATCTCTG AAGGTTTGAC TTCCATCGCA TCGAAGATTA AGAACTTCAT TCCTGAAAAG
AAGCAGTTGC CCATCACCAG TGTGGTGGAA GCAATTATGG ATCCCAACAA CGCCTCCAAC
ACATCCACCC AGTTGACTGA TGACTACTTG TACTTGGACC CCAAGTCACG GGGTGGACAC
TCAAAACCTC CCAGAAGACA ATCATACCAA GAGTCATTGG TGTTTGTCAT CGGTGGAGGC
AACTATTTAG AATACCAGAA CTTACAGGAA TGGGCCAGCC AACCCAATAA GCCAAACAAG
AAGGTCGTGT ATGGAAGTAC TAGCATTAGT TCGGCAAGTG AATTCTTGGA TGAGTGTATT
GAGTTGGGTA GCCGCTAG
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| Protein sequence | MSLVDTSSLR GRQIATLERM LHLNKDGSPD LTLASKNEDI IWKVLVLDTK SRAVLSSVLR
VNDLLRCGIT VHSLISQKRT ALPDVPVIYF VEPNIDNVLQ IIDDLESDKY DKFYVNFTSL
INRELLEEFA KKVSISGRLF RIKQVYDQYL DFIVTEPNLF SLDFKDIFTQ FNNAGTDEDT
IHRLVDQIAL GLLLTIITQE NVPVIRAQQG GPAEFVATQL DLKLRDYLSN SRSSLSLAQL
IQQRPVLILL DRNIDLASML AHSWIYQCMV SDVFSLQRNT IRIHKYKENE STPEFKNYDV
DPRDFFWNKY SQLPFPDVVE SADIELNAYK TEAKELTNKT GITSLTDIDP NSNDTANMQQ
ALEKLPELTA RKTTLDMHMD ILAALINELQ AKSLDKFFEI EQNASDPKIE SEFLELLTSL
AQRDNAQDKL RTFLILVLLV DLPKQYITKV RNVFVDKYPT INLASLDYVL KFKEHAKLTN
ISSLNDTSTQ NSYSNSANNN TNTSALLSGL SSKLYGLTEG KISEGLTSIA SKIKNFIPEK
KQLPITSVVE AIMDPNNASN TSTQLTDDYL YLDPKSRGGH SKPPRRQSYQ ESLVFVIGGG
NYLEYQNLQE WASQPNKPNK KVVYGSTSIS SASEFLDECI ELGSR
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