| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_51919 |
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| Symbol | TRM2 |
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| ID | 4851030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 768223 |
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| End bp | 769905 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | |
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| GC content | 42% |
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| IMG OID | 640392738 |
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| Product | tRNA(m5U54)methyltransferase |
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| Protein accession | XP_001387373 |
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| Protein GI | 126274016 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00837808 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGCTA CGGAAGAAAA GAAGAGGCCA ATTACACCTC CCATCGAAGA GGGAGAAAAC
AAGAAACAGC ATACTGGTGG AAAGGAACAA CAAAAAAAGC AGCCCAAAGT ACACAGAAGA
AAGTACAAGG CTAAGGATAT CGACCAGACT TCACCTATGG GAGTTCTTCA GTTTGAAATT
GATGCGATTT TGAATGAACA CAATTTGGTC AAAGACGATG TTTCCAACAA CATGTCGTTG
ATCCTCAACG ATGAATCTGC TCAGCAGAAA TATCATCGTG TAGTCTCTGA TGTCAAGATC
GAGCTTCTTA CCTCGAATGG TGAAGGTCTT GCATTGATTC CTCATCCCGA TGAGAGTAAG
AAGAATCAAG TTTGCATAGT GCCATTTGGA CTACCAGGTG ACATCGTGAC GGTTAAGGTC
TTTAAATCGC ATCCGTTATA CGTAGAGTCA GATTTAGTTT CTGTCGAAAC AGAAGCTTCG
GTTCGTGACA ATTCCTTGAT CAACTGTAGC TACTTTGGCA AGTGTTCCGG ATGTCAGTAC
CAAAACGTCG AGTACGAACA GCAGTTGAAG TTTAAGAGAG AGACCATTGT CAATGCTTAT
AAGTTCTTTG CGCCTGTGTT GAACAACAAT AATAGATTGC CAGAGATCAG GGATACGGAG
CCTTCTCCGT TAAAATACAG GTACAGAACC AAGTTGACCC CACATTTCAA CGTCCCGTAC
AAGAAGAACT TTGTTCTCGA AACCAGGCCA AACTTGGGTT TTGGATCCAA GGGTAGACCA
ACATGGAGGA AAGACGTAGA AATACCCGAT GGCTCTATTT TGGATATCGA AGAATGCACG
ATTGGTACTC CCATCATTAA CATCGGAATG AAAAACGAAA GAGCTAGATT CGAACAAGAA
TTCAAGAAGT ACAAGAAGGG TGCTACCATT TTGTTGAGAG AGGACACCAA TGTTGTAAAC
AATGGAGAAG ACTTCGAGTT AAAGGAAGCT TCCACCGACG TGGAAGGTAA GATTTCATCT
GTTGAAGTAA ACATAGAAGG AGAAAACAAG AAGTTAGTTA AGACCTGTGT CACCAAGAGC
AGACAAATAG TTACTGAATA CGTGAATGGA TACACATTTG AATTCTCTGC TGGGGAATTC
TTCCAAAACA ACAACTCCAT CTTGCCAGCT GTTACCAACT ATGTCAAGTC CAATTTGGCT
ATCCCAAATT CCAAGGAAGG AGAACCAAAC TACTTGGTGG ATGCATACTG TGGATCCGGT
TTATTCTCCA TAACGTGTTC TGATAACGTT TCGAAGGTAA TCGGAGTTGA AGTGTCTGCA
GACTCGGTCA AATTTGCCGA ACGTAATGCT AAGAACAACA ACATCGAGAA TGCCTTATTC
TTAGTAGGTA AGGCAGAACA AATCTTTGGA AGTATCGACA CTCCCAGCAA CAGAACATCT
GTTATCTTAG ATCCACCAAG AAAAGGTTGT GATGAGGTAT TTTTGAACCA ATTGTCAGAC
TACCATCCTG CAAAGATCGT CTACATCAGT TGTAATGTGC ATTCTCAAGC TCGTGATGTA
GAATGGTTCA TAAACAACAC CGAGAACGGA AAAGACTACT ACGTGGAAAG CATCAAAGGA
TTTGACTTTT TCCCACAGAC GCACCACGTA GAAAGTGTCG CTGTTTTAGC ATTGAAAAAC
TAG
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| Protein sequence | MSATEEKKRP ITPPIEEGEN KKQHTGGKEQ QKKQPKVHRR KYKAKDIDQT SPMGVLQFEI
DAILNEHNLV KDDVSNNMSL ILNDESAQQK YHRVVSDVKI ELLTSNGEGL ALIPHPDESK
KNQVCIVPFG LPGDIVTVKV FKSHPLYVES DLVSVETEAS VRDNSLINCS YFGKCSGCQY
QNVEYEQQLK FKRETIVNAY KFFAPVLNNN NRLPEIRDTE PSPLKYRYRT KLTPHFNVPY
KKNFVLETRP NLGFGSKGRP TWRKDVEIPD GSILDIEECT IGTPIINIGM KNERARFEQE
FKKYKKGATI LLREDTNVVN NGEDFELKEA STDVEGKISS VEVNIEGENK KLVKTCVTKS
RQIVTEYVNG YTFEFSAGEF FQNNNSILPA VTNYVKSNLA IPNSKEGEPN YLVDAYCGSG
LFSITCSDNV SKVIGVEVSA DSVKFAERNA KNNNIENALF LVGKAEQIFG SIDTPSNRTS
VILDPPRKGC DEVFLNQLSD YHPAKIVYIS CNVHSQARDV EWFINNTENG KDYYVESIKG
FDFFPQTHHV ESVAVLALKN
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