| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_40152 |
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| Symbol | SNC2 |
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| ID | 4851953 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 3287381 |
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| End bp | 3288090 |
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| Gene Length | 710 bp |
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| Protein Length | 111 aa |
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| Translation table | |
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| GC content | 39% |
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| IMG OID | 640393661 |
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| Product | Synaptobrevin/VAMP-like protein |
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| Protein accession | XP_001387197 |
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| Protein GI | 126276125 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5143] Synaptobrevin/VAMP-like protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.480151 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGTCTT CCGTCCCTTA CGATCCATAT ATCCCTAACC AGACTACTGG AGACCAATCG
CAGTCGAGAA CTGCGGCCAT CCAGGCAGTA AGTATAGAGA GAAGCATTTG ATTGAAAAGA
CAAAATATGA ATGAAGACCA GAAATGAAAT GTCACCAACC AGATATAACT GTATGAACGT
TATGTTGTTT GATGTCACAA AGTCTACTCG CAAACCATGA ACTAGATTAT TCGAATATTG
TAGTCTCACA TTATTATGAA ACACATTGTC ATAATTTTCG TTCACAGCTA TTATATCATA
TCGCATCATG AGAGCTATGA TCATAACGTG AAGATAGTAT TGCAGTAGAG GCTGTCAGAC
CATATGATAG TGTGTATTCA CAATCATGGC ATATCATTTC TTTATTTTTT TTTCATTCTT
ATGGTTTAAC GTCACATTAA TTTCCGTACT AACCATTCTA GCAAATCGAC GACACCGTCG
GAATCATGAG AGACAACATC AACAAAGTCG CCGAAAGAGG TGAAAGATTG GACTCCATAG
AAAACAAGAC CGACAACTTG GCCATCAGTG CACAAGGGTT CAGAAGAGGC GCCAATAGAG
TCAGAAAAGA CATGTGGTGG AAGGACTTCA AGATGAGATT GTGTATTATC TTGGGAGTTA
TTATCGTATT GATTGTCATC ATTGTGCCCA TTGCTGTCCA CTTCAGCTAG
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| Protein sequence | MSSSVPYDPY IPNQTTGDQS QSRTAAIQAQ IDDTVGIMRD NINKVAERGE RLDSIENKTD
NLAISAQGFR RGANRVRKDM WWKDFKMRLC IILGVIIVLI VIIVPIAVHF S
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