| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_34371 |
|---|
| Symbol | CPS1 |
|---|
| ID | 4851388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 1680573 |
|---|
| End bp | 1682321 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | |
|---|
| GC content | 44% |
|---|
| IMG OID | 640393096 |
|---|
| Product | Gly-X carboxypeptidase |
|---|
| Protein accession | XP_001387964 |
|---|
| Protein GI | 126274458 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.531597 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGCTT TGCCTTTGGA CAATTACAAC ACAACAACGC CCTTGTGGAA GAGAAAATCG
GTAGGTGCAA TCGGAGCGAT TGTGGCTCTC TTATTGGTTC TTTTAACTAC TGACCTCTAC
AGCCACCTCA AGGTTGCGCT TCTTCCTTTA GATACCTCGG ACTCGTTGTG TCCCTTGTAT
GAGCCTATTT TCCCGAAGTC GTTTTCTGTG GACAATTCGA CTGTTCTCGA CATTTTGTAT
GGAGAAGACT TTAGAAATGC ATCTATTGCC AAGTTGGCAG GAGCCATTCA AGTAGATACA
CAAATCTTTG ACAACCAGCC AGATGTGCCA GACTCGCCAG AGACATGGGC AAAATTCAAG
AAGTTCCACA AATACTTGGA AAAGACGTTT CCTATCGTCT ACAAGAACTT GCAAGTTGAA
AAAGTCAACA CCTACGGTTT GGTCTACTTC TGGAAAGGTT CTGACGATAG CTTGAAACCT
TTGATGTTAA CTGCTCACCA AGACGTGGTT CCAGTTCAGC AGGATACACT TAAAGATTGG
ACTTATCCTC CATTTGAGGG CCATTACGAC GGTGAATTCA TTTATGGAAG AGGTGCTGCG
GACTGTAAGA ATGTGTTGAT CTCCATCTTG GAGACGATAG AATTGTTGTT GAAGAAGGGC
TACCAGCCAC AGAGGTCGGT TATCGCTGCA TTTGGCTTTG ATGAAGAAGC ATCAGGTGTG
GTTGGTGCTG CTAAGATTGG TCAGTACTTG GAAAAGACTT ATGGTAACGA CTCTGTGTAT
GCCATTATCG ATGAGGGTCC AGGCTTGTTG CTTGACCCTC TCACCAAGAC CATATTGGCT
GCTCCTGGTA CTGGAGAAAA GGGCTATATC GACATTGACG TTGAATTGAC TACCCCTGGT
GGCCATTCTT CCGTTCCTCC TGACCATACC TCCATTGGTA TCATTGGAGA GTTAACCTAT
TTGATAGAAA AGGATCCTTA CTCTCCACTC TTGACTTCCA AGAATCCAAT CTTGAGCTAC
ATGCAATGTG CAGCTCTTCA CGACCCTTAT GACAACATCC CTAGGTACTT GAAGGGTGCG
ATCTTGAGAG CTGCTCACGA TAGATTTGCA AATTCTCGTG TGGTCAAGAC AATGCAACAA
AGCAAGCTCA TGAAGTACTT AGTACAAACG TCTCAGGCTA TAGATATTGT GAAAGGCGGG
GAAAAGGCAA ATGCCTTGCC TGAGCACGTC AAGTTGTTGG TCAATCACAG AGTCAATATC
GACTCTTCTC TTGAAGAAGT CAAACATCGT TTCGTTTCCA GAGTCGTAGA AGTCGCAAAA
AGACATAACT TGGCTGTAGA AGCTTTTGGT GAGTTGGTTC TTGACACCAA GAATAACTCT
GGTGTGTTTG TACTCAATTC TCAAACTCCG TTGGATATTG CTCCAGTAAC TCCTTTGAAT
GACAACGTGT GGAAATATCT TGCAGGTGTT ACCAGACATG TCTTTGAAGA CTTGGTGTTC
CCTGATATCG AGTATCCAAT TGTCACTTCT CCTTCTATAA TGACTGGAAA CACTGATACC
AGGCACTACT GGAACTTGAC GAGAAACATC TTTAGATACT CACCTCTTTT TACCAGCGAT
ATGATCCATG ACACTAACAT TCATAGTGTG GATGAGAAGT TGAAGTTTGA CACTCACTTG
CAGTTGACGG CATTTTTTTA CGAGTACATC CAAGCCGTGG ATACTGCCGA GGCTGATAAT
GAGAACTAG
|
|---|
| Protein sequence | MVALPLDNYN TTTPLWKRKS VGAIGAIVAL LLVLLTTDLY SHLKVALLPL DTSDSLCPLY
EPIFPKSFSV DNSTVLDILY GEDFRNASIA KLAGAIQVDT QIFDNQPDVP DSPETWAKFK
KFHKYLEKTF PIVYKNLQVE KVNTYGLVYF WKGSDDSLKP LMLTAHQDVV PVQQDTLKDW
TYPPFEGHYD GEFIYGRGAA DCKNVLISIL ETIELLLKKG YQPQRSVIAA FGFDEEASGV
VGAAKIGQYL EKTYGNDSVY AIIDEGPGLL LDPLTKTILA APGTGEKGYI DIDVELTTPG
GHSSVPPDHT SIGIIGELTY LIEKDPYSPL LTSKNPILSY MQCAALHDPY DNIPRYLKGA
ILRAAHDRFA NSRVVKTMQQ SKLMKYLVQT SQAIDIVKGG EKANALPEHV KLLVNHRVNI
DSSLEEVKHR FVSRVVEVAK RHNLAVEAFG ELVLDTKNNS GVFVLNSQTP LDIAPVTPLN
DNVWKYLAGV TRHVFEDLVF PDIEYPIVTS PSIMTGNTDT RHYWNLTRNI FRYSPLFTSD
MIHDTNIHSV DEKLKFDTHL QLTAFFYEYI QAVDTAEADN EN
|
|---|
| |