| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_34164 |
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| Symbol | RRP40 |
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| ID | 4851047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 806230 |
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| End bp | 807012 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | |
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| GC content | 42% |
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| IMG OID | 640392755 |
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| Product | Exosome complex exonuclease RRP40 (Ribosomal RNA processing protein 40) |
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| Protein accession | XP_001387383 |
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| Protein GI | 126274033 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1097] RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.442314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAGGCG ACTTGATAAT ACCGGGAGAC TTTCTTCCCA TTGATACCGA TTCTTCTATC
AAGACCACTA TTGGACCAGG AATCTACAAG AATCCTCAAA CGCAGAGCAT ATTGCCTACC
AATGCTGGAC TCATAAACAT TCAAAAAAGC AAGGCAGGAA CGAATCAGCT TGTCTACATC
GAGTCAAACT CTAAGAGATA CACCCCCCAA ACAAATGACT TTGTTATTGG CATTGTGACT
GGAGTCATAG GAGAATCATA CAAAGTTCAG TTGCAAGACT TTTCTCCTGC GGTTCTACTC
TCAATGATGG CTTTCCCAAA TGCAACGAAA AAGAACAGAC CCAACCTCAA GATTGGTCAG
GCAGTATATG CCCGAGTCTC TGAGGCCATT CCTGAAATAG AAACCGAATT AGAGTGTATT
GATCCAACTA CCGGTAAAGA AGGTGGATTT GGGTTGCTTG ATGAATCTGG ATACATTTTC
GAAGTAAATT TGAATTTTGC TCGTGAACTT TTGTTCAATG CCAACAGTAT TTTCTTGGAG
AAATTGGCGT CCAAGTGCAA ATTTGAAATT GCCGTTGGAA TCAACGGTAA GGTCTGGATC
AAGTGTGGTG AAGGTATCAA GATCGAGAAA GACAGAGTCG TACCTGAAGA AGGAAAGCCT
GTAAGAGACA ATACCAGAGA CTTGAAGAGC ACTTTGGCAG CCGCAGGCTT TTTGGTGAAG
TGCCAGAAGT TGAGAGTAGA TCAGATCGAT GCCGAATTAC AGAAACAGTT CAAGAACATA
TAG
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| Protein sequence | MSGDLIIPGD FLPIDTDSSI KTTIGPGIYK NPQTQSILPT NAGLINIQKS KAGTNQLVYI
ESNSKRYTPQ TNDFVIGIVT GVIGESYKVQ LQDFSPAVLL SMMAFPNATK KNRPNLKIGQ
AVYARVSEAI PEIETELECI DPTTGKEGGF GLLDESGYIF EVNLNFAREL LFNANSIFLE
KLASKCKFEI AVGINGKVWI KCGEGIKIEK DRVVPEEGKP VRDNTRDLKS TLAAAGFLVK
CQKLRVDQID AELQKQFKNI
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