| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_29180 |
|---|
| Symbol | |
|---|
| ID | 4851912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | + |
|---|
| Start bp | 3160762 |
|---|
| End bp | 3162279 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | |
|---|
| GC content | 42% |
|---|
| IMG OID | 640393620 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001386933 |
|---|
| Protein GI | 126276000 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2319] FOG: WD40 repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.648326 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCTAG TGCAGGGGTA TAGTTCTAGC GAAGAAGAAG GGGTCCAATT GCCCCAGTTG
CCGGTATATG ATATTCGGAC CTATAGCGAG AAACACTCTG CGAAATCTGA GAATGAGTCT
GAAGCTATAG CCACTGAAAA TTCGAGGAAA AGAAAGGCTT TTGGAGCTAC TATTGAAGGT
GCTTACTATG ACAGAGCTAC ATTTGAACTC CAAGCGAAAT TGGAGCGAAG AAACAAACTG
GCATCGCAAG AAGTGAAACT GAAAGCTAGG AAAATCAAAA AGAAAAGGTC TAAGAACGGA
AGCGATGACG ATTATTTAGG ACCCTGGGCC AGATATGAAA GCGAGTCTGA AGATCTAGAT
CAAGAAAATG AAGCTGAAGT TAAAACTGAA GAATATTACA ATAATGACAA GAAGAATGAA
CAGGAGAGTG ATAATGAAGC TTCCAATGTA GGCTCTGATA ACGAAAATGA AAATGATCCA
AAGTCAACAA CTGAGTTTTT GGGTTCACAA GAACACGATT ATCTTGGACG AACTTATATG
CATGTATGGC GAGACTTGCC TATTGATCTA AGCAAAGAAC CAAGTACTCA CGAATGCTTC
GTTCCCAAGA AAGTCATCCA TACATTCCTG GGACATCCCA GGGGCGTCAA CAAGCTTGAA
TTCTTTCCCA AATCGGGACA TCTTCTTCTA TCTTGTGGTA ACGACGGAGA AGTCAGACTC
TGGGACTTGT ACCACAAATT TGAGCTTCTC AGGGTGTTTC ATGGCCACAG TCAAGCTGTA
AAGGATGTTA CATTCAACTC GTCTGGCACT GAGTTTCTAA GCTGTGGGTA CGACAAAAAA
GTTATTCTTT GGGACACCGA GACGGGTGAA ATTAAAAAGA GTCTACGAGT AAAGGCTATT
CCGAATGTTC TTCGATTCAA TCCCAAAAAT GAAGACGAAT TCATAGTAGG ATTAAGCAAT
AACGATATTG AGCACTATGA TCTTTCTTCT TTGGACTTCC ATACTCCCGT TCAAACCTAC
AATCACCACT TAGGAGCCAT CAATTCTTTA ACTATTATCG ATGATAACAA TAAATTCATG
TCTACAGGTG ACGACAAAAC AGTACGGTTC TGGAATTGGC AGATCAACAT TCCCATCAAG
TTCATTTCCG ATCCGTCACA GCATTCTATG CCTGCCGCTG CAATTTACCC TGGAGGTAGC
TTCATAGCGT TGCAGAGTAT GGACAATTCG GTAAAGGTAA TTCAAGGACA CGGAAAGTTC
CGGTTCAACA AAAAGAAAAC TTTCCGAGGC CACAATGTTG CTGGTTACGG AATCGGTCTC
GATATCTCGC CAGATGGTAA GATCCTCATG AGCGGCGATG CCAAGGGGTG TGGCTATTTT
TGGGATTGGA AGACTTGCAA GCTTGTAAAG AAGTTGAAGG TTTGCGATAA ACCCATCAGC
TGTATCAAGT TCCATCCCCA GGAATCTAGC AAAGTTGTTC TAGCAGGAAT CACAGGGGAA
ATCTATTTCT GTGATTGA
|
|---|
| Protein sequence | MSLVQGYSSS EEEGVQLPQL PVYDIRTYSE KHSAKSENES EAIATENSRK RKAFGATIEG
AYYDRATFEL QAKLERRNKL ASQEVKLKAR KIKKKRSKNG SDDDYLGPWA RYESESEDLD
QENEAEVKTE EYYNNDKKNE QESDNEASNV GSDNENENDP KSTTEFLGSQ EHDYLGRTYM
HVWRDLPIDL SKEPSTHECF VPKKVIHTFL GHPRGVNKLE FFPKSGHLLL SCGNDGEVRL
WDLYHKFELL RVFHGHSQAV KDVTFNSSGT EFLSCGYDKK VILWDTETGE IKKSLRVKAI
PNVLRFNPKN EDEFIVGLSN NDIEHYDLSS LDFHTPVQTY NHHLGAINSL TIIDDNNKFM
STGDDKTVRF WNWQINIPIK FISDPSQHSM PAAAIYPGGS FIALQSMDNS VKVIQGHGKF
RFNKKKTFRG HNVAGYGIGL DISPDGKILM SGDAKGCGYF WDWKTCKLVK KLKVCDKPIS
CIKFHPQESS KVVLAGITGE IYFCD
|
|---|
| |