| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_29164 |
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| Symbol | SRT1 |
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| ID | 4851896 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 3128740 |
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| End bp | 3129791 |
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| Gene Length | 1052 bp |
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| Protein Length | 318 aa |
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| Translation table | |
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| GC content | 42% |
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| IMG OID | 640393604 |
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| Product | cis-prenyltransferase involved in dolichol synthesis |
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| Protein accession | XP_001387164 |
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| Protein GI | 126275948 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
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| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.225728 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTTGAAA CAACCTCGAC GCCCTTTTCG TCGTTCTCCT TCAAAGCAAT TGTTGATCTC
GTGCTTTATT TCCCACTTTT CTCGTATCTC TTCGGTTTCT TCCAGGACTT CTGTATCGAA
GTCATGAAAA CAGGTCCCAT TCCAAACCAT GTAGCTCTTA TTATGGATGG CAATAGAAGA
TACTCCAAAG CCAAGAACTT GCCTCTTAAA GAGGGTCACA TTTCGGGGGC AGAAACGTTG
CTCACCGTAT GATATACCTA TAGATCATAT CTATGATACC GATCACACAG AAAGATGTGT
ATACGCAGAA GCTAGAGCAG CTACTAACCA TTTCATTATA GGTACTAGAC GTCTGCTATA
GACTCGGAAT TGATCATGTC ACCATCTATG CCTTCTCTAT CGAGAACTTC AATCGATCTC
AGGAAGAAGT CGATACTCTC TTTGGCTTGT TGAGAGATAA GATCACCCAG ATTTCTGAAC
ATGAAGATTC TTATGCTCGT TTCAATAATG TCAGAATCAG GATCATTGGA AACAGAACTT
ACATTCCACC AGATATCCTT GCAGATCTCG AAAGAGCAGA GCTTGTCACC AAGGATTCCA
AACACAACCG TACTCTCAAT GTTTGTTTTC CTTATACTTC AAGAGATGAT ATTGCAATTT
CCATGAAGAA TATTGCGGAA AAGGTGCAAG TCCAAGAGAT TCCTTCCAAG GACGAAATCA
CTTTACAAAC TTTGAAAGAA AACAATTACT TTGGTGCCGA CGTGCCAGAG TTGGATATCT
TGATTAGAAC AAGTGGTCAC ACTAGACTCA GCGACTTCAT GCTCTGGCAG GCTAATTTCA
ATTGCATGAT TGAATTCGTC GACACATTAT GGCCAGACTT CAAGTTCTTC TCTATCACAT
CTGTCATCTT GAAATGGAGC TACTACAAGA CTCTTCAGAT CCAACAGTTC GAAGCTCAGG
GAATTAAAGA CGACGAAGAC CGTTCCAGAA AAATGAAGAA GCTTATGGAA TTACCTCCTC
CACCGCCTAT CGCTTCAGTA TCCCAGCGCT GA
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| Protein sequence | MVETTSTPFS SFSFKAIVDL VLYFPLFSYL FGFFQDFCIE VMKTGPIPNH VALIMDGNRR
YSKAKNLPLK EGHISGAETL LTVLDVCYRL GIDHVTIYAF SIENFNRSQE EVDTLFGLLR
DKITQISEHE DSYARFNNVR IRIIGNRTYI PPDILADLER AELVTKDSKH NRTLNVCFPY
TSRDDIAISM KNIAEKVQVQ EIPSKDEITL QTLKENNYFG ADVPELDILI RTSGHTRLSD
FMLWQANFNC MIEFVDTLWP DFKFFSITSV ILKWSYYKTL QIQQFEAQGI KDDEDRSRKM
KKLMELPPPP PIASVSQR
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