Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_29003 |
Symbol | |
ID | 4851740 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | - |
Start bp | 2709410 |
End bp | 2711905 |
Gene Length | 2496 bp |
Protein Length | 831 aa |
Translation table | |
GC content | 36% |
IMG OID | 640393448 |
Product | predicted protein |
Protein accession | XP_001387086 |
Protein GI | 126275441 |
COG category | [R] General function prediction only |
COG ID | [COG5141] PHD zinc finger-containing protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.596418 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.417698 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTAACC AAACTTCATT CACAACAGGC AGATCGATTG CTGATCCCAA CTACGCCCAG GTGGCGCTCT TTGACAGTCA CTCCAAGCCA CGTGAGGAAA GGGACTTCAA AGAAATATAC CCCGATCTTG ACGAAGGCAT CCAGCTCAAC ATGTTTGTAT TGAATAATGA CGCGGAGGAT GACAATGACA TCGACATGGT TAATCCTGGT CCTGTAATTA TGTCCGAATT AAAGCAACCC GTGTTCAATA AGATAGATGA TGGAGCGGGT GACGCAAATC GTTTAAATGT CAAATTTAGT AAGTCTATAA CAGCGTATGG CTTCCAGGAA CAAAATAGAG TAATTAGTAA AACTATCCAA GACACATATA TTCGTCCGTT CCAGTTGCCT GGTTCAAACG AAAATGGTTC CGATGATGTT TCCATAATTG GAAGAATTTT GGAAAGAAAA CGAAACGCCG TAGAATATGA TATGGACGAA CAGGATTGTT TGTTCTTGAG TTATAGAAAC CAACAACCCA ACAATGTAAT CAAAATAACT CCAGAAGTGT TTGAAATTAT GATAACGACA TTAGAAAATG AATGGGACAA ACTAGAACAC CAAATGAATT CGATAATAAA TAATAATGGC AGTCTGGAAA GAGCCTATGA TGGCTCTACG ACGTTTCTTC TGTTGGACCG AGATGATATT GAGAAATACG GAACCGACGA CGGCATAATT CCAGGTTCTA TATATGATCA AAGGTGTGCC GTATGCAATG ATAGTGATTG TGACAATTCG AATGCTATTG TTTTTTGTGA TGGTTGCGAT ATAGCTGTAC ACCAAGAGTG TTATGGAATA GCATTTATTC CTGAAGGGCA ATGGCTTTGC CGAAAATGTA TGATAAACAA GAACCGTAAA ACGGATTGCG TTTTTTGTCC GAGTAAAACG GGTGCATTTA AGCAACTTGA TAATAGTTTG TGGAGCCATG TCATTTGTGC TTTATGGATT AATGAATTAT ATTTCGCCAA TCCGATTTAC ATGGAACCTA TTGAAGGCAT AGATTTAATT CCGAAAAGCC GTTGGAAATT GGTTTGCTAT ATTTGTAAAC AGAGGATTGG TGCTTGCATC CAATGTACTA ACCGAAACTG CTTCCAGGCA TATCATGTCA CATGTGCTAG AAGAGCTGGT CTCTACATGG AAATGACTAT GGGAATGCAA GGTGCTATTA GCAACAAGAT GACATTGAGG ACTTTTTGTG ACAAGCACAG TCCGCCAAGT TGGAATGCAG AAGATATTCC CAGGGGCATT CAACGGACTA GGTTGTTCTA TCGTGATACG AATATTCTAA ATGAAAGAAA TGCCAAACTC AGTAGCTATC AAAAGACTGC CAACAAACTT AATATATTCA AATGGAAAAC AGAAAATAAT ACTCCAATTG CCCCCAAGGT TTTTAGTGAT GTTTTGTTTA ATATTTTGCA AGCATTAAAA GTTGAAAATC AAGTTTCCTT AGAAGAAAAT AATCAATTGA AAGACTTGAA TGTCTTGCCT AATCGATCTC GTGAAGATAT TTGGGCGGAC ATGAGAAGTA TCAGCAATGA AATTTGCCGC TATTGGTGTT TAAAAAGAGA ACTGAAAAAG GGAGCTCCAT TAATAAGAAA GAATAACAAT TTCGTTTCCA CGAGCTCCAT TTTATATAAC GCTAATGGAT CTGATACTAG AAGTGACGGA GATTATTATG AACAAATTGA CGAAATTAAA GGACGGATAG ATTTTGCAGA AGTTTTGGTC AGAGATTTAG ATAAGGTGAT TGATATGAAT AAGGATTCAT TATCGAGACA AGTCTATTCA CGAGAAGTGC ATAACTTAGA ATTTGAATCA ATTGATGCTG TTTATTTTCC TATCAAGAAA GTCATCGAAA ATTGTTTGAA TACTTTAAAT GAAAAATTCG ATGCTAATAG AATTATTCAA GGATATCAAG TCAAGGTGGA AAATGAAAAT GAAAATAGAA GGAAATTTGG TGATTTACCT GTGCAAATAT CTGAACAAGA TAATAAAAAT GGTGAGGGGG TGCTGGATTT TCTACAGCGG GATTTTACTG ACATGTTACC GCGACCACTT ACATTGTCTC AAATAATTTC AAAAAACGCA AAGTACGGTT ATTTCACAAT AGAGGAGTTC AATAAAGATC TTCAGAAATT TAGTGAAATT GTTCTTCAAC GAAGTAAATC ATCAAACAAT ATTCACAGGC TAATGAAGAG ATGGATGAAA GAGTATTACA AGATACTTCC AGAGATGTTT TCCTTTGAAA ACAAGGTTAA AAGGGAATTA AATAATAACG AGAAAATATT GACAAGTAAT TATTTTAGTT CCCCTTCCCT TGGCGTGCAT GGGAGTGAGA TTATGTTTAA ATCATATGAT GTCAAAGAAT TATTGGACGA GAATGACTTG AGTGAAGTGG AAAATGATAT GAACGATGCA AATCAACATG AGCTACATAG ATTTTTAAAT GGTTGA
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Protein sequence | MSNQTSFTTG RSIADPNYAQ VALFDSHSKP REERDFKEIY PDLDEGIQLN MFVLNNDAED DNDIDMVNPG PVIMSELKQP VFNKIDDGAG DANRLNVKFS KSITAYGFQE QNRVISKTIQ DTYIRPFQLP GSNENGSDDV SIIGRILERK RNAVEYDMDE QDCLFLSYRN QQPNNVIKIT PEVFEIMITT LENEWDKLEH QMNSIINNNG SLERAYDGST TFLLLDRDDI EKYGTDDGII PGSIYDQRCA VCNDSDCDNS NAIVFCDGCD IAVHQECYGI AFIPEGQWLC RKCMINKNRK TDCVFCPSKT GAFKQLDNSL WSHVICALWI NELYFANPIY MEPIEGIDLI PKSRWKLVCY ICKQRIGACI QCTNRNCFQA YHVTCARRAG LYMEMTMGMQ GAISNKMTLR TFCDKHSPPS WNAEDIPRGI QRTRLFYRDT NILNERNAKL SSYQKTANKL NIFKWKTENN TPIAPKVFSD VLFNILQALK VENQVSLEEN NQLKDLNVLP NRSREDIWAD MRSISNEICR YWCLKRELKK GAPLIRKNNN FVSTSSILYN ANGSDTRSDG DYYEQIDEIK GRIDFAEVLV RDLDKVIDMN KDSLSRQVYS REVHNLEFES IDAVYFPIKK VIENCLNTLN EKFDANRIIQ GYQVKVENEN ENRRKFGDLP VQISEQDNKN GEGVLDFLQR DFTDMLPRPL TLSQIISKNA KYGYFTIEEF NKDLQKFSEI VLQRSKSSNN IHRLMKRWMK EYYKILPEMF SFENKVKREL NNNEKILTSN YFSSPSLGVH GSEIMFKSYD VKELLDENDL SEVENDMNDA NQHELHRFLN G
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