| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_1946 |
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| Symbol | |
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| ID | 4842234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS155 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009052 |
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| Strand | + |
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| Start bp | 2261794 |
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| End bp | 2263269 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640119166 |
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| Product | YscC/HrcC family type III secretion outer membrane protein |
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| Protein accession | YP_001050319 |
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| Protein GI | 126174170 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAC TACTCAGTTT ACTGTTACTG TGTCAGATGG GCCTAGCTCA GGCTGCACCA
CTGACAAACA TTAAATGGCA AGGTGAGCCC TTTGTCATGA TCAGTCGAGG TACAGCGCTA
ACCTCAGTCA TTCAGGACTT TGCCAGTAAT TATGGCGTAC CAGTCATTGT TAGTAATAAG
GTCAACGACA ACTATATTGG CCAAATACAA CAGCAAGATC CTCAATCCGT TATCCAAGAT
CTCACCCGTC GCTTTGGTTT AGTCTGGTAC TACAACAACG ACGTCTTATA TGTTTACAAA
GCCAGTGAAA TTAATAGTGA AGTGCTACCG CTAACCAGCT TATCCGCGGC TAAGGTCGAT
CACTACCTGC GCAGTGCAGG AGTACTCGAT AAGGGGGTCT GTAGCATTAA ATCTATGGCA
GGGATCAGTG GCTTACAAGT CACAGGTGTA CCCGAATGCA TTAACAGCGT CACCAAACTC
ACGGCACAAC TCGATGCCAA TGCTAAACAA ACCACAGAAA ACCAAGAAAC GGTTAAAGTC
TATCCACTGA AATACGCATC TGCAACCGAC TCGGTTTATC AATATCGTAG CCAACCTGTG
AGTATTCCAG GATTAGTTAC AGTGCTAAAA GAAATGGATC AAGGTACACA AGTCGCCAAT
GCCGTGGCGG GTTCTGTGAG TAATATAAGC GGTCCAGTCT TTGCCGCCGA TCCTCGCCAA
AACGCCATCA TAGTCCGTGG CAGTGCCCGT GATATGGCCA CTTATGGCTC TTTGATAAGA
CAACTCGACA CTAAGCCCAC CATGATTGAA GTGTCTGTAT CGATATTCGA TGTGGACGCC
TCTGACTTTA AACAGCTAGG CATAGATTGG TCGGCGTCAG CCAAATTAGG CGGTGGTTCA
GTGAGCTTCA ACAGTGGTGA TAGCAGTGAC AATTTTTCCA CCGTCATAGG TAACACTGGC
AACTTCATGC TGCGCCTCAA TGCACTAGAG AAGAACTCTA AGGCCAAAGT ACTCTCACGT
CCCTCAGTAG TGACGTTAAA CAATGTGCAA GCCGTACTCG ATAAAAATGT GACATTTTAC
ACTAAGTTAG AAGGAGATAA AGTCGCTAAA TTAGAATCAG TGACCACAGG TTCTCTATTA
CGAGTCACAC CAAGATTAAT TGATGAAGTG GGCCATCAGG CTGTGATGCT GGATCTCAAT
ATTCAGGATG GTCAACAGAG CCAAGCAGTG AGCCGCAGTG AACCATTACC ACAAGTACAA
AACTCCGAGA TCTCGACCCA GGCGACGCTG AAATCGGGAG AGAGTCTGTT ACTCGGCGGC
TTCGTACAAG ATAGAGATGA AACGACCCAG AACAAGATCC CACTACTGGG CGATCTACCA
CTGCTGGGCG GTTTGTTTAG AAGTACAGAT CACCACACTC AAAGCGTGAT GCGTCTGTTC
CTGATCAAAG CGGAACCCGT TAACCAAGGA GATTAA
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| Protein sequence | MKKLLSLLLL CQMGLAQAAP LTNIKWQGEP FVMISRGTAL TSVIQDFASN YGVPVIVSNK
VNDNYIGQIQ QQDPQSVIQD LTRRFGLVWY YNNDVLYVYK ASEINSEVLP LTSLSAAKVD
HYLRSAGVLD KGVCSIKSMA GISGLQVTGV PECINSVTKL TAQLDANAKQ TTENQETVKV
YPLKYASATD SVYQYRSQPV SIPGLVTVLK EMDQGTQVAN AVAGSVSNIS GPVFAADPRQ
NAIIVRGSAR DMATYGSLIR QLDTKPTMIE VSVSIFDVDA SDFKQLGIDW SASAKLGGGS
VSFNSGDSSD NFSTVIGNTG NFMLRLNALE KNSKAKVLSR PSVVTLNNVQ AVLDKNVTFY
TKLEGDKVAK LESVTTGSLL RVTPRLIDEV GHQAVMLDLN IQDGQQSQAV SRSEPLPQVQ
NSEISTQATL KSGESLLLGG FVQDRDETTQ NKIPLLGDLP LLGGLFRSTD HHTQSVMRLF
LIKAEPVNQG D
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