Gene Memar_2475 details

Gene Information

• Locus tag: Memar_2475
• ID: 4846203
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: +
• Start bp: 2453145
• End bp: 2455025
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640117185
• Product: putative PAS/PAC sensor protein
• Protein accession: YP_001048378
• Protein GI: 126180413
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2202] FOG: PAS/PAC domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.732483
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGCCGG AGCAGGACAT CCCGGGGAGA ACCCTACGAA CTCTCAAATT CCGGCCGAAG 
GGCATGACGA TCACCGAGAT CGCGAAGGCC CTCGGGGCAA ACCGGAACTC GGTCTCGAAG 
CACCTTGAGG TGATGCAGGC GGCAGGCCAG GTCGAGGCCC GGCTCGTCGG CAACGCCAAG 
GTCTATTCCG TCACGCAACG CATACCCCTC TCGGCGTTCC TCTGCTTTAC GAAGAACCTG 
ATCCTGGTTC TCGATGCCGA CCTCACGGTC GTCCAGACCA ACGACCAGTG CCTCGGGGGA 
TTCGGGCGCC CAAAAGCGGA AATCGTGGGC CGAAACATCC GCGATGCCGA TCTCCCCGTC 
GTCTCCTCCC CCGAGGCCCT TGCCGTCGTC GAGAGTCTCG ATCGGGAGCA GGTGATCGCC 
GACATCTCCC ACCGGTGGGA TGACGGCAGC GAGTCTTTCT ACCAGATGCA GGCGATCCCG 
ACGACGTTCG AGGACGGAGA GAAGGGGTGT ACCATCGTCC TCGAGGATAT CACCGAGCGG 
AAACAGTATA TCCGGAACAC GATGTTCCTC GCCCGAACGG CGATCGACCT CGTCGATCTG 
CCGCCGGGCA ACATCTACCA GTACATCATC GATCGGCTTA CGGAACTCGC GCCGGGAACG 
TTTGCTTACT TCTTCTCCTA CGATGAAGCC GACCGGCAGT TCGTCATGCG GGCGGTCGCG 
GGCGACGGAT TCCGGGAAGC GTTCACGGAA CTCCTGGGAC GGGACCCCGT CGGCCTGACC 
CTCCCCGTCG CCCGGGCCTT CGATGCCCCC TTCAACCAGA CCCCGGGGTC GATGCGCAGC 
CTCCAGGAGT ATGTCCTCCG CCCCGAACTA TCCTCGTGGT CGTTCTACGA CCTCTGCTTT 
GGGGGGATCC CGGAAGAGGC CTGCGAGGCG ATCCTTACCC AGTTCGGTAT TGCGAAACTG 
TACACCATGG GGCTGGTCTG GCGGGAGGAG ATCTTCGGCA TCACGGGCAT CTTCCTCCCA 
CCGGGAAGAG AACTTGAGAA CCGCGAGACG ATCGAGTCGT TCATCCGGCA GGCATCCATC 
GCCCTCGCCC GGCGGCAGAC CGCCGAGCGG CTCCGGCAGA GCGAGGAACG GTTCCGGGGG 
ATGGTCGATT CGTCTCCCTT CGGGGTCGCG CTCATCGACC GCGAGAGGCG GTTCGTCTAC 
GTCAACCGGA GGTTCGTGGA GATCTTCGGC TACGGTCCGG ACGAAGCACC CACGGTCACA 
GAGTGGACCC GGCTGATCTT TCCGGACGAA GGTCGCCGGC AGGAGGCCAT CGGTGCCTGG 
CGATCGGATC TCGAGCGCTC GGTCCCGGGC CAGGTCAGGC CCCGGACGTT TACTGTCCGA 
TGCCGGGACG GGACGAAAAA GACGGTTCTT TCACGCTTCG TAACACTTTG CGACGGGACA 
GAGTATTCGA CCTGCGAGGA TATCACCGAA GAGACGCGGG CCTACCACCT CCTCGTCGCG 
GACATCGCCG ACCTGCGGCG GCGGGAGCAG GAACTCCTCA TCAAAGACCA CGCGATAGCC 
TCCACCCGGC AGGCGGTCGC GCTCCTCGCC CCGGACGGGG TGGTGACCTA CGCGAACGCC 
ACTTACCTCG CCCTCTGGGG CTACCCGACC GAAGGAGCGG TGCAGGGCTC GCACTTCTCC 
CGGTTCTGGG TACGGCCGGA CGAGATCCTG GACGTCATCC GGACAGTCAT CGAAGGCCGG 
TCCTGGCACG GTGAACAGAC CGGCATCCGG AGTGACGGTG CAACGTTCCG GGTGGATCTC 
CTCGGGACGC CGATCGTCAG CCACGACGGC AGGGTGCTCG GGGTGATGAT GGCAGCGACG 
TTCCGGAGGA ACGGAGCTTG A 

 

Protein sequence

MQPEQDIPGR TLRTLKFRPK GMTITEIAKA LGANRNSVSK HLEVMQAAGQ VEARLVGNAK 
VYSVTQRIPL SAFLCFTKNL ILVLDADLTV VQTNDQCLGG FGRPKAEIVG RNIRDADLPV 
VSSPEALAVV ESLDREQVIA DISHRWDDGS ESFYQMQAIP TTFEDGEKGC TIVLEDITER 
KQYIRNTMFL ARTAIDLVDL PPGNIYQYII DRLTELAPGT FAYFFSYDEA DRQFVMRAVA 
GDGFREAFTE LLGRDPVGLT LPVARAFDAP FNQTPGSMRS LQEYVLRPEL SSWSFYDLCF 
GGIPEEACEA ILTQFGIAKL YTMGLVWREE IFGITGIFLP PGRELENRET IESFIRQASI 
ALARRQTAER LRQSEERFRG MVDSSPFGVA LIDRERRFVY VNRRFVEIFG YGPDEAPTVT 
EWTRLIFPDE GRRQEAIGAW RSDLERSVPG QVRPRTFTVR CRDGTKKTVL SRFVTLCDGT 
EYSTCEDITE ETRAYHLLVA DIADLRRREQ ELLIKDHAIA STRQAVALLA PDGVVTYANA 
TYLALWGYPT EGAVQGSHFS RFWVRPDEIL DVIRTVIEGR SWHGEQTGIR SDGATFRVDL 
LGTPIVSHDG RVLGVMMAAT FRRNGA