Gene Memar_2003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMemar_2003 
Symbol 
ID4847719 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanoculleus marisnigri JR1 
KingdomArchaea 
Replicon accessionNC_009051 
Strand
Start bp1989146 
End bp1991521 
Gene Length2376 bp 
Protein Length791 aa 
Translation table11 
GC content61% 
IMG OID640116709 
Producttype II secretion system protein E 
Protein accessionYP_001047911 
Protein GI126179946 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTTTGC CGTTCCAGTC CCCGGAAGAG GATGTGCGGG AAGAGACGGT TCCGGAGGAG 
GTTGCAGAGC CCGTTACCGA TGATATGAAC GAGCAGCCGG AGCCTTCGCC AGTGCAGGAG
CAGAAGAGCG CGGAGATCCC GCAAAAGAGC GGGGGGATCC GTTCGCTCAT CGACACGGTG
GCGAGGTCGG GCGACACCGC CGCACCGCGT GCAGCCGGCA GCAGAGATCC GGTCAGGGCG
CTCCTCGACC GGATCGGTCG GGGCAAGGGG GGCAGCGCCG AAGAGGTCGT GTCCACCCCG
ATGGTAGAGA CACACGATCT CCATGCGGAG CCGAAGATGC CGGGCGATCC GCCGGCGGCG
GTTGAGGATT TCGGGGCGGA GCAGGATGTG CCGGCTTCTT CCCCCGGGAA CCATACCCCT
GCGGGAATCC TCGATCGGGT GAAAGGGTGG AGTGAGGGTG ATGAATCCGG CACCCCCAAA
CCGAAACCCC GCGTTGTGGG AGACGTCGAT GATCCCGGAA TCGGAGGAGA TCTATCCGAC
GGCGTGGTAA CGGTAGAGGA GCTCGGGAAC CTGGCGGATC TGATCCTCCC GAAGAGCGCG
ACGTTCACGA TCGATGAACT GAGCATCAAC CGCAATGAGC ACCATTTTGA TTTCGTCGAC
AATGCCAGGG TCGTGTCGGA GTTCGACGAT ATCTTCTCCC AGTCCCTCTC CTCCACTTCA
CTTGCTGCGG CTGCCGCACA GGTGGTGACC CCCGCCGAAG AAGTTCCGCA GCCCCGGTTC
GGATTCCTCA AAAAGATCCA GGTGCCGAAA GTCGGCGCCG TGGTCGAGGA GTACAACCCT
GCGTTCCACG GTCAGCTCGT CGAGCTCACG ATGCGACCGT CACCGGGGGT GGAGGAGATC
GAGCTCTACC CGGTGAACGA ACCGTATGCC TATGTCCGGG TGACCTACGA CAGCACGACG
CACGAGTACA CCTATAACGT CATCGAGCCC GTGCTCACGC CCGGGGAGGA GCAACTCTTT
TCGGAGATCA AAGAGCGGCT CTTTGAGACG CTCAACATTA CTTCCCGTGA CCTCACCCGT
GACGAAGCGA GGACAGCGCT CCGCGAAGCG GCGAACATGA TCATCGCCGA CTACGGAATC
CGCCTCGAGC CTCTCGGGCG GGAGAAGATT CTCTATCACG TTGAGAAGGA GTTCCTCGGC
GACGGGCTGA TCGACCCGGT GATGCACGAC AAGTACATCG AGGATATCTC CTGCGACGGC
GTGGACAGTG CCATATTCGT CTATCACACG ACCTACGAAT CGATGAAGAC GAGCCTCGTC
TATCACGACG CCGTGAGTCT CGACTCGTTC GTCACGAAAC TTGCGCAGCG GGCCGGGAAA
TACATCTCGA TCGCCGAGCC GATGCTGGAT GCCACGATGA GCGACGGATC GCGTATCCAG
ATGACGCTCG GGGCGGAAGT GACCGCTCAC GGTTCGACGT TCACGATCCG TAAGTTCCGG
GAGGAGCCGA TCACGCCGAC AGATCTTATC GAGTGGCACA CCTTCTCGCC GCTTGGGATC
GCCTTCATCT GGCTCGCGGT CGAGAACGCC AAGTCCTGCA TCTTTGCCGG CGGGACGGCG
TCCGGAAAGA CGACGACCCT GAACGCCGTA TCGCTCTTCA TCCCGCCGCT GGCAAAGATT
GTCACCCTCG AGGATACCCG GGAACTGAAA CTGCCTCACC CGAACTGGAT CCCGAGCATC
ACCCGGGACT CGTTCTCGCA GGACGGGCGC GGCGAGATCG ATATGTACGA ACTCCTGCGT
GCTGCGCTCC GGCAGCGTCC GGAGTACATC CTGGTCGGTG AGGTCCGTGG CAAGGAGGCC
CTGACCCTCT TCCAGGCGAT GAGCACCGGT CACGTCACCT ACGCGACGAT GCACGCCGAC
TCGGTGGCAA GCGCCGTCCA CCGTCTGGAG AACCCGCCGA TAGACGTGCC GAGGAACATG
CTCTCTGCAC TGAACCTGAT GTCCATCCAG GTGCAGGCCC GTATAGGCGG TCAGCGGATC
CGGCGGAACA AGCAGCTCAT CGAGATCCTG GATATCGATC CCCGGACGAA CGAACTGATC
ACGAACGAGG TCTTCCGGTG GCATCCGGCA ACCGACGAGA TCCGGTATTC CGGCAAATCC
TACATCCTCG AACAGATCAT GGAAGACCGG GGCTGGAGCG AGGAGCGGAT GCGTGAAGAG
CTGAAACGCC GGCAGGAAGT CCTTGAATGG ATGCGTATCA AGAAGATTCG CCATTTCAAG
GACGTGAGCA AGATCCTGGT CTCCTACTTC CGCGATCCGG AGACGGTCGT TCAGCGGGTG
CGTGCCGACC TCTACGGGGA GGGTGGTTCC GCATGA
 
Protein sequence
MGLPFQSPEE DVREETVPEE VAEPVTDDMN EQPEPSPVQE QKSAEIPQKS GGIRSLIDTV 
ARSGDTAAPR AAGSRDPVRA LLDRIGRGKG GSAEEVVSTP MVETHDLHAE PKMPGDPPAA
VEDFGAEQDV PASSPGNHTP AGILDRVKGW SEGDESGTPK PKPRVVGDVD DPGIGGDLSD
GVVTVEELGN LADLILPKSA TFTIDELSIN RNEHHFDFVD NARVVSEFDD IFSQSLSSTS
LAAAAAQVVT PAEEVPQPRF GFLKKIQVPK VGAVVEEYNP AFHGQLVELT MRPSPGVEEI
ELYPVNEPYA YVRVTYDSTT HEYTYNVIEP VLTPGEEQLF SEIKERLFET LNITSRDLTR
DEARTALREA ANMIIADYGI RLEPLGREKI LYHVEKEFLG DGLIDPVMHD KYIEDISCDG
VDSAIFVYHT TYESMKTSLV YHDAVSLDSF VTKLAQRAGK YISIAEPMLD ATMSDGSRIQ
MTLGAEVTAH GSTFTIRKFR EEPITPTDLI EWHTFSPLGI AFIWLAVENA KSCIFAGGTA
SGKTTTLNAV SLFIPPLAKI VTLEDTRELK LPHPNWIPSI TRDSFSQDGR GEIDMYELLR
AALRQRPEYI LVGEVRGKEA LTLFQAMSTG HVTYATMHAD SVASAVHRLE NPPIDVPRNM
LSALNLMSIQ VQARIGGQRI RRNKQLIEIL DIDPRTNELI TNEVFRWHPA TDEIRYSGKS
YILEQIMEDR GWSEERMREE LKRRQEVLEW MRIKKIRHFK DVSKILVSYF RDPETVVQRV
RADLYGEGGS A