Gene Memar_1821 details

Gene Information

• Locus tag: Memar_1821
• ID: 4847758
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: +
• Start bp: 1809372
• End bp: 1810043
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 640116521
• Product: ABC transporter-related protein
• Protein accession: YP_001047729
• Protein GI: 126179764
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.373636
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCATAC CGGTTATCGA ACTCGACGAC GTCACGAAGG TCTATCCCCT CCCTGCAGGC 
GACGTCACGG CCCTCTCCGG GATATCTATC AGGATCGACG AGGGGGAGTT CGTCGCCATC 
ATGGGGCCGT CGGGGTCGGG AAAATCAACC CTCCTCAACC AGATCGGGTG CCTCGACCGC 
CCCACCTCGG GCGACCTCTT CCTCGCAGGG AAGAACACCC GGGAGATGGA CGACCGGGAG 
CTGACCAGTC TCCGGCTCTC GTCCATCGGC TACATCTTCC AGAAATTCAA CCTCATCCCG 
CTTCTCTCCG CCTACGAGAA CGTCGAATAC CCCTACATCA TGAAGCACCG CAAAAACGAC 
GACACCGGGA GGGTGCGGGA CCTTCTCGCC CTGGTCGGAA TCGACGAAAG CCTCTCGACC 
CATAAGCCGA ACGAACTCTC CGGCGGTCAG CAGCAGCGCG TTGCAATCGC CCGGGCGCTC 
GTGAACGACC CGGCGATCCT CCTCTGCGAC GAGCCGACCG GAAACCTGGA CTCGCAGACC 
GGCACCCAGA TCATGGAGGC GCTCTCGGAA CTCCACAAAA AAGGCCGGAC GATCGTCATG 
GTGACCCATG AATCCGAGAT CGCGGCATAT GCAGAACGGA CGATCGTCAT CCGGGACGGG 
AGGGTGGCAT GA 

 

Protein sequence

MSIPVIELDD VTKVYPLPAG DVTALSGISI RIDEGEFVAI MGPSGSGKST LLNQIGCLDR 
PTSGDLFLAG KNTREMDDRE LTSLRLSSIG YIFQKFNLIP LLSAYENVEY PYIMKHRKND 
DTGRVRDLLA LVGIDESLST HKPNELSGGQ QQRVAIARAL VNDPAILLCD EPTGNLDSQT 
GTQIMEALSE LHKKGRTIVM VTHESEIAAY AERTIVIRDG RVA