| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1558 |
|---|
| Symbol | |
|---|
| ID | 4847506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | + |
|---|
| Start bp | 1562509 |
|---|
| End bp | 1563783 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640116251 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_001047469 |
|---|
| Protein GI | 126179504 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.635884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTCA TAGAAGACGC CCGGCGCGGT GTCGTCACTG AAGAGATGCG GATCGTCGCA
GCAGCGGAGG GGGTTACCGA AGATTTCGTC CGGCGCGGTG TGGCCGAGGG TCACATCGTC
ATTCCGGTCT CCCCCTACCG GAGGGTGAAG ATCTGCGGCA TCGGCGAAGG GCTTCGCACG
AAGGTCAATG CAAGCATCGG GACGTCGACG GATATGGTCG ACGTCGATAT GGAGGTCGAG
AAGGTCCGGC AGGCCGAGCG CGCCGGTGCC GATACGTTGA TGGAACTCTC CACCGGCGGC
GACTTTTTAG AGATCCGGCG CCGGGTCGTC GAGGCGACCA CCCTCTCGGT CGGGTCGGTC
CCGCTCTACC AGGCGTTCAT CGAGGCCGCC CGGAAGCGTG GGGCGGTCGT CCACATGGAG
CCGGACGACC TCTTCCGGAT CACAGCGGAG CAGGCGAAGC TCGGGACCAA CTTCATGGCG
ATCCACACCG GGATCAACTA CGAGACGATG AAGCGCCTCC AGAACCAGGG GCGGCACGGC
GGGCTCGTCT CCCGGGGCGG GGCCTTCATG ACCGCGTGGA TGCTCCACAA CGAGAAGGAG
AACCCGCTTT ATTCGGAGTT CGACTACCTG CTCGAGATCT TGAAGGAGCA CGAGGTCACC
CTCTCGTTCG GCAACGGGAT GCGGGCGGGA GCGGTTCACG ACGCGACCGA CCGCGCCCAG
GTCCAGGAGC TGCTTATCAA CGCGGAACTC GCCGATAAAG CGCATGAACA GGGTGTCCAG
ACGATCATCG AGGGACCGGG GCATATCCCG GTCGACGAGA TCCAGACAAA CGTCGTCCTG
CAAAAAAGGG TCACGAACCG GAGACCGTTC TACATGCTCG GGCCGCTCGT CACCGATATC
GCGCCCGGCT ACGACGACCG GGTGGCCGCC ATCGGGGCCG CGCTCTCCTC CTCCTACGGC
GCCGACTTCA TCTGCTACGT GACGCCGGCC GAGCACCTGG CGCTTCCCAC CCCCGAGGAG
GTCTACGAGG GCGTCATGAG CTCGAGGATC GCCGCCCACG TCGGGGATAT GATCAAACTC
AAGAAGCGGG ACGCCGACCT CGAGATGGGT CATGCCCGCC GCGACCTCGA CTGGGAGCGG
CAGTTCGCGG TCGCGATGAA CCCCGAGCGC GCCCGGGCGA TCCGGGACGA ACGGATGCCG
GCCGATACCG ACGGCTGCAC GATGTGCGGG GACTACTGCG CGCTGAAGAT TGTTGGAAGG
CATTTTAATT TCTGA
|
|---|
| Protein sequence | MSLIEDARRG VVTEEMRIVA AAEGVTEDFV RRGVAEGHIV IPVSPYRRVK ICGIGEGLRT
KVNASIGTST DMVDVDMEVE KVRQAERAGA DTLMELSTGG DFLEIRRRVV EATTLSVGSV
PLYQAFIEAA RKRGAVVHME PDDLFRITAE QAKLGTNFMA IHTGINYETM KRLQNQGRHG
GLVSRGGAFM TAWMLHNEKE NPLYSEFDYL LEILKEHEVT LSFGNGMRAG AVHDATDRAQ
VQELLINAEL ADKAHEQGVQ TIIEGPGHIP VDEIQTNVVL QKRVTNRRPF YMLGPLVTDI
APGYDDRVAA IGAALSSSYG ADFICYVTPA EHLALPTPEE VYEGVMSSRI AAHVGDMIKL
KKRDADLEMG HARRDLDWER QFAVAMNPER ARAIRDERMP ADTDGCTMCG DYCALKIVGR
HFNF
|
|---|
| |