| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1551 |
|---|
| Symbol | |
|---|
| ID | 4847759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | - |
|---|
| Start bp | 1554925 |
|---|
| End bp | 1556760 |
|---|
| Gene Length | 1836 bp |
|---|
| Protein Length | 611 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640116244 |
|---|
| Product | phosphoesterase domain-containing protein |
|---|
| Protein accession | YP_001047462 |
|---|
| Protein GI | 126179497 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1107] Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0428573 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATA CAGAAGATAC GATTGTTTAC CGCCTCGGTG CGAACTGCAG TCTCGACGAG
GTGGAGGAAG GAAAGACGTA CCTCGGGCGG GTGCAGGGAT TTGCCCCGTT CGGCGTTTTT
GTCCAGTTAA ACGACCGGGT CAAAGGGCTC GTTCATAAGA GCAACGTGAA GGTGCAGCAT
AGCGAGCGCG ACCCGATCAT CGTTCACGTC CTCCAGATCC GGAGCAACGG CAACATCGAT
CTCGAGGAGG TCACGCCGAC TGTCTACCAG ACGGAGAACG TGACCCGGAC GACGACGACC
GTGCTGATTG CCGATATCGG GAAGAAGATC GGCAGGACCG TGCTGATCGA GGGCGAGATT
GCCCAGATCA AGCAGACGTC GGGGCCGACG ATCTTTACCC TCGTGGACGA GTCGGGCACC
GCGAATGCCG CAGCGTTCGT CGAGGCGGGC GTCCGCGCGT ATCCCGAGGT GGAACTCGGG
GCTATCGTCG CCCTCACGGG CGAAGTGATG CAACGCAACA ACCAGCTCCA GATCGAAGTC
TCGTCTATGA TGGTGATGGA GCCGGAGGAT GCGGCACGGG TCAGGGAGCG GATCGACGCG
GCGCTCGATG AGCGTGCTGA GCCGCTCGAC CTCCCGTTCC TGGTGGAGAG CGAGGTCCTC
GAGGCCCTCC GGCCGCAGAT GCGCAACGTG GCAAAGGAGA TCAGAAAGGC TGTCCTGACC
GCGCGGCCGA TCATCCTCCG GCACCACGCG GATGCAGACG GCATATGCGC CGCCGTTGCC
GTCGAGCAGG CGGTGACCGC ACTGATCCGG GAGAGTGGTG GCGATTTCGA CGCGGAGTTC
TTCCTCTTCA AGCGATCCCC ATCCAAGGCT CCGTTCTACG AGATCGAGGA TATCACGCGG
GATCTCGACT TCGCCCTCAA GGACAACGTC CGCTACGGGC AGAAGATGCC GATGATCCTC
CTGATGGACA ACGGGTCGAC CGAGGAGGAT ATGCCGTCGC TGAAGGTAAC CCGGATCTTC
GGTCTCCCGG TGATGGTCGT CGACCACCAC CACCCCGACG AGATCGTGGA CGATTACCTG
ATCGGGCACG TCAACCCCTA CCACGTGGGC GGCGACTACG GGATCACGGC CGGAATGCTG
GGCACAGAGG TCGCCCGCAT GGTCAACCCG GCGGTCGAGA ACCAGATCCG GCACCTGCCG
GCAATCGCGG GGCTCGGCGA CCGGAGCGAA GCGCCGGAGC GTGCCCGCTA CCTTGCGGTG
GCTGCGCCCG AGTACTCGGA GGACGATTGC CGCGATATCG CGCTCGCGCT CGACTACGAG
CAGTTCTGGC TCCGGTTCAG CGACGGAAGA GAGATCGTCA AGGACATCCT GAACCTCTCC
GGCGAGCCCG AACGCCACGA ACGGTTCGTT CACCTGCTGG TCGAAGAGGC GAACCGGGCG
ATCGAAGAGC AGATCGAGAC CAACATGCCC CACGTCGAGA GCCGGATGCT CCCGAATGGT
GCTCACCTCT TCATGCTCGA CGTGGAGATG TTTGCTCACC GGTTCACGTT CCCACCGCCG
GGGAAGACTT CCGGGGAGGT GCACGACCGG CTGGTCCGGC AGCACCCGGG AGAACCGGTC
GTCACGATCG GGTTCGGGCC GGACTTTGCC GTCCTGCGTT CCCGGGGCGT CATGATGAAC
ATCCCGCAGA TGGTGCGCGA ACTGCATAGC GAGATCGTCG GTGGCGGCGT GAGCGGCGGT
GGGCACCTTG TCGTCGGGAG CATCAAGTTC GTGGAAGGGA TGCGTGACGT GGTCATCGAC
AGCCTGATCA AGAAGATTGG TGAAGCGCCA ATCTGA
|
|---|
| Protein sequence | MEDTEDTIVY RLGANCSLDE VEEGKTYLGR VQGFAPFGVF VQLNDRVKGL VHKSNVKVQH
SERDPIIVHV LQIRSNGNID LEEVTPTVYQ TENVTRTTTT VLIADIGKKI GRTVLIEGEI
AQIKQTSGPT IFTLVDESGT ANAAAFVEAG VRAYPEVELG AIVALTGEVM QRNNQLQIEV
SSMMVMEPED AARVRERIDA ALDERAEPLD LPFLVESEVL EALRPQMRNV AKEIRKAVLT
ARPIILRHHA DADGICAAVA VEQAVTALIR ESGGDFDAEF FLFKRSPSKA PFYEIEDITR
DLDFALKDNV RYGQKMPMIL LMDNGSTEED MPSLKVTRIF GLPVMVVDHH HPDEIVDDYL
IGHVNPYHVG GDYGITAGML GTEVARMVNP AVENQIRHLP AIAGLGDRSE APERARYLAV
AAPEYSEDDC RDIALALDYE QFWLRFSDGR EIVKDILNLS GEPERHERFV HLLVEEANRA
IEEQIETNMP HVESRMLPNG AHLFMLDVEM FAHRFTFPPP GKTSGEVHDR LVRQHPGEPV
VTIGFGPDFA VLRSRGVMMN IPQMVRELHS EIVGGGVSGG GHLVVGSIKF VEGMRDVVID
SLIKKIGEAP I
|
|---|
| |