| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1479 |
|---|
| Symbol | |
|---|
| ID | 4848438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | - |
|---|
| Start bp | 1472665 |
|---|
| End bp | 1475877 |
|---|
| Gene Length | 3213 bp |
|---|
| Protein Length | 1070 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640116171 |
|---|
| Product | type III restriction enzyme, res subunit |
|---|
| Protein accession | YP_001047390 |
|---|
| Protein GI | 126179425 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.980213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGCAC AGCGGGGACG AAAGAAAGGG CAAAAGCCCG GGAAATCATC GAAGGAGGAG
GGACTCCGGC CGTGGCTGGT CAAGTGCGCA TTTGCGTACC GTCTCTTCGG GATGAAGTCC
TTCCAGGACT TCCAGGGTGC CCTCGCTGGC GTCGAGGAGG GCGAGGGTGA GGACGGGCAC
ACCCACTACT ACCACGTCCT CAAGAGCGAC ACCCGGTTCC GGAAAGACGC CGGCGTCACG
CTCGACGAGT TGCGCAACTA CGACGACAAT ATTGTGCGGC ACATGCACCG CATCAACGTC
CACCGCGACG TTCCCATCAA CCTCAAGTAC TACCAGTGGC TTGCCGCCCT TTTCACCGAG
GCCTACCTGG ACCGCTACTT CCAGAGCCCC GGGAGACTCG CCTCCCTGGT CGAGGAGGCG
GTGAAGGAAT ATATCAAAGA GGCATTTCCA TCCGTCCTAG ACCCCTATGA GTATTACGAG
CGGTACATGC CCGGCATGGA CGACCTCCGC AAGTGCGCCT ACTGGATGGC GACCGGGTCG
GGCAAGACCT TCCTCATCCA TCTTGCCTAC CTCCAGTTCC AGCACTACAA CAAAGGACCC
CATCGGCTGG ACATTGACCG CATCCTCCTC ATCACCCCTA ATAGCGACCT CACCGCGCAG
CACCTCCGGG AGATGAAGAA AAGTGGCATC CCGTGTACCG AGTTCGACGC CACCGGGCTC
GGCGGCTACT TCCAGCGGCA GTCTGAGGAG GCCGTGAACG TCATCGAGAT CACCCGGTTC
ACCGAGGACA AACAGGACGG CGGCCTCAGG CGGGTGGACA TCGAGAGCTT CGGCAGGAAG
AACCTCGTCT TCGTGGACGA AGCGCATAAG GGCAGCGGCG GTGAGAAGTG GAAGATGTTC
CGGCGTGAAG TTGCCCGCGA AGGCTTCACC TTCGAGTACA GCGCCACATT CGGGCAGGCG
GCGGCTTCAG GAGGCGATAA CGACAACCTC GCCGAATTTG CCAAGACCAT CCTCTTCGAC
TACTCCTACC CGTACTTCTA CAACGACGGC TATGGCAAGG AGTACCGCAT CCTCAACGTC
AACAAATCCA CGTACGAAAC GGACCGGGTG CTCCTCGCAA ACCTCCTCAC CTACTACGAG
CAGAAACTGG TCTTCGAGGA TCTCAAGGAC GTCGCCACCG CCGAGTACAA CATCGCCGAC
CCGCTCTGGA TATTCGTGGG GAGCAAGGTC AATGTCTCCG GCACCAAGTC CGACGTGCTC
ACGGTCGTCC GGTTCCTGCA GAAGGTTCTC ACCGAACGGG ACTGGATAAC CCGGACCACG
GATGAGTTCC TCCAGGGAAA ATCCGGCCTT CTCCACGAAA AAACCAAGCA CGACATCTTC
AGTCCGGCCT ATCCCGAGCA GCGCCTCCGT TACCTCAGGG AGCGTGGGCT GAGCGCGGAG
GAGATCTACG GCGACATGCT TGGCCGCATC TTCCGCTGCG CCGAACCCGC TGGTCTGACC
CTTGTGCTCC TGAAGGGCAC TGATGGGGAA ATCGGTCTCA AAAGCGGCGA CAGCGACTTC
TTTGGGGACA TCTACGTTGG AGACGCAACG AAGTTCATAA AACTTGTCGA AGGGCATGAG
CCGCAGATTG GTATCGAGAG AATCGATCAT CCATCACTTT TCCGCGCCAT CGACGCCCCG
GACTCCACCG TGAACGTGCT CATCGGTGCG AAAAAGTTCA TCGAAGGCTG GGACTGCTAC
CGGGTCTCCT GCATGGGGCT CATCAACATC GGGAAGAGCG AAGGCACCGA GATCATCCAG
CTCTTCGGGC GCGGGGTCCG GCTCAAGGGC AGGAACAATT CCCTCAAACG CAGCACCAAC
GATGCCGGGG ATCAACCCCT GGATCTCCCG CTCCTGGAGA CGCTCAACAT CTTCGGGGTC
GACGCCAAGT ACATCGGCTA CCTGCGCGAG TTCCTCACCA TCGAAGGCGT TGATGATTAC
AAGACCGTCG AACGACATAT TGCAATCAAG GTCTGCGAGG ATCACCTCAG CGAAGGTCTG
CTCATTCCCC ACTGGGAGAA GACCGGATTC GAGAGGAAAC GACGGTTCGT CCTGACTGGA
GATCACATCG TCCCGGTAAA GGTTGATCTC CTCGCCAAAG TGGAGAGTGA GGACAGCGTG
TATTACGAAG GTTTGGAAGC CGACTCCCGC CCCGACCCCG TCTCAATCGA CCCGCGCTAC
CTGGATCTCG TTGACTGGGA CGCGGTGTAC TTCACCCTCC TCGAGCACAA GAGCAGCAAG
GGCTGGAAGA ACATGGTCTT CGACAAAACC CTGTTACGGG AGACCATAGA AGACCCCGGG
CGCTACACCC TGTACTGTGC CGACCATGTT ATCAACCCTG AGTCATTTGG GGACGTGCAG
AAACTGCAGG ACGTCATCGT GCTTGTCCTG AAAAAGGCGC TCCAGGCTGC GTACAGCCGG
CAGAAGAACG CATGGATGAT GGAGAACATC TGGATCGAGC GCCTTTCGGA GTCACATGGC
AATTTCGAGT TCAAGGAGTA CGTCGTAAAA ATGCGGGAAA ACGAGACGGA CGTAATCGAG
GCAATCGATG CGCTTGCCCG GCAGGTCGAT CGGATCTATG CGGACGAGAA CACCAAGTTC
GTCACCAATG TCTTCTTCCA GAACCACCTG TATCAGCCGC TGCTCGCAAA AACCAGTAAG
GCTTCGAGTA AAATCGCCGC AATCTCCCCG GAAGGGCTCA ATGAGGGTGA AGAAAAACTG
GTGCAGGGGA TTAAGAACTA CATCAATGAC CATGCAGATC TCTTCGACGG AAAAAAGATC
TATCTGCTTC GCAACATCCC GAAAACCGGC GTAGGTTTTT ACAAATATTC GTGGTTCTAC
CCGGATTTCA TCATGTGGGT GGTCGACGCC AGCAAGCAGC ATATCGTCTT CCTTGAGCCG
CATGGGATGG TGTTCAGTCC CGGGCCTGAA GATGAAAAGG TGCAACTTGC AGAGGATATC
AAGGAGATCG AGCGGAAAGT CAATGCAACG TACAGGAATA AAGGCATTGA ATGCGGAATA
TCACTCGACT CCTTCATCAT CTCCGTGAGC CAGCCGGGCA CGGTGGCTGA GACGTCTCTT
TACAAAACGA AAGAGCAGCG GAAGAAGCAC CATGTCCTTT CCCTTTATCA ATCGAACTTC
ATTAGTGAGT TGTTTGAATT CGTTCTCTCA TGA
|
|---|
| Protein sequence | MAAQRGRKKG QKPGKSSKEE GLRPWLVKCA FAYRLFGMKS FQDFQGALAG VEEGEGEDGH
THYYHVLKSD TRFRKDAGVT LDELRNYDDN IVRHMHRINV HRDVPINLKY YQWLAALFTE
AYLDRYFQSP GRLASLVEEA VKEYIKEAFP SVLDPYEYYE RYMPGMDDLR KCAYWMATGS
GKTFLIHLAY LQFQHYNKGP HRLDIDRILL ITPNSDLTAQ HLREMKKSGI PCTEFDATGL
GGYFQRQSEE AVNVIEITRF TEDKQDGGLR RVDIESFGRK NLVFVDEAHK GSGGEKWKMF
RREVAREGFT FEYSATFGQA AASGGDNDNL AEFAKTILFD YSYPYFYNDG YGKEYRILNV
NKSTYETDRV LLANLLTYYE QKLVFEDLKD VATAEYNIAD PLWIFVGSKV NVSGTKSDVL
TVVRFLQKVL TERDWITRTT DEFLQGKSGL LHEKTKHDIF SPAYPEQRLR YLRERGLSAE
EIYGDMLGRI FRCAEPAGLT LVLLKGTDGE IGLKSGDSDF FGDIYVGDAT KFIKLVEGHE
PQIGIERIDH PSLFRAIDAP DSTVNVLIGA KKFIEGWDCY RVSCMGLINI GKSEGTEIIQ
LFGRGVRLKG RNNSLKRSTN DAGDQPLDLP LLETLNIFGV DAKYIGYLRE FLTIEGVDDY
KTVERHIAIK VCEDHLSEGL LIPHWEKTGF ERKRRFVLTG DHIVPVKVDL LAKVESEDSV
YYEGLEADSR PDPVSIDPRY LDLVDWDAVY FTLLEHKSSK GWKNMVFDKT LLRETIEDPG
RYTLYCADHV INPESFGDVQ KLQDVIVLVL KKALQAAYSR QKNAWMMENI WIERLSESHG
NFEFKEYVVK MRENETDVIE AIDALARQVD RIYADENTKF VTNVFFQNHL YQPLLAKTSK
ASSKIAAISP EGLNEGEEKL VQGIKNYIND HADLFDGKKI YLLRNIPKTG VGFYKYSWFY
PDFIMWVVDA SKQHIVFLEP HGMVFSPGPE DEKVQLAEDI KEIERKVNAT YRNKGIECGI
SLDSFIISVS QPGTVAETSL YKTKEQRKKH HVLSLYQSNF ISELFEFVLS
|
|---|
| |