| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1203 |
|---|
| Symbol | |
|---|
| ID | 4847130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | + |
|---|
| Start bp | 1179580 |
|---|
| End bp | 1181916 |
|---|
| Gene Length | 2337 bp |
|---|
| Protein Length | 778 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640115893 |
|---|
| Product | beta-Ig-H3/fasciclin |
|---|
| Protein accession | YP_001047116 |
|---|
| Protein GI | 126179151 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2335] Secreted and surface protein containing fasciclin-like repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0966614 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACGAC CTGTATTGTT CGGTTTGTGC ATCATTCTCT TCCTATCAAT CTCTGCTGCA
AGTGTAGCGG TCTCGATTGG AGGAGGACCT GTTGAACTGA ACCCTGATGA GACTGTGAAC
ATCACACCGG TAAACAGTAC CGAAACCTAC GAGGTGCCGC AGACGACAGT GCTTGGAGCA
CTTGATGCTG CCTCGATCCT CGGATCATTC GAGTACCAGG TTGCTGAAGA CCTGCCTCTG
GATGAGGAAA ACCTCAGCAT TCTATCGATT ACCGACATTG AAAACGAGAT TGTGAACGAG
ACTCCGAACA ACTGGACCTT CTGGGTCAAC GACGAGCAGG CCACGACAGG GCCCGCGGTG
ACGAACCTCA CCGACGGGGA CAACCTGACC TTCTCCTACG GGCCCCCGTC GCACACCCTG
GAAAACGCCA CGTATACCCT GATGGTGAAC GTGACCGTTC TTGGGGCGGT TGTTACTCCG
ACGCCGACGG TGAACGTCAC TCCGACGCCG GGAGCGAATG TGACGCCCTT CGTCAACGTC
TCCGATCAGC CGATCGAGAA CGATACGGTG ATCGTTGACA ACGCCACGAT CAACCAGACG
GGTTGGGCGG ACATCCACGC GGACCTGAAC GGAACGCCCG GGCCGATCAT CGGCTACAGC
CAGATCACCG AAGGCGTAAA TGAGAACGTT TCCGTGGAGA TCGAGGTCGA GAACGCCACG
CCGGTGCTCT ATGCCATGCT TCACATCGAT GCGGGAGAGC CGGGCGTCCA TGAGTTCCCG
GGCCCCGACG TGCCGATCCT GGTGAACGGA AGCCCCGTCC AGCAGGCCTT CAACGTGACC
GGGGGGCTGC CCGAAGAGAA CGTTACGCCG ACCCCAACGG TGAACGTTAC GCCGAGTCCG
ACGGTGAACG TTACGCCGAG TCCGACGGTG AACGTTACGC CGAGTCCGAC GGTGAACGTT
ACGCCGACAC CGACGGTGAA CGTTACGCCG AGTCCGACGG TGAACGTTAC GCCGAGTCCG
ACGGTGAACG TTACGCCGAG TCCGACGGTG AACGTTACGC CGACACCGAC GGTGAACGTC
ACGCCGACAC CAACGGTGAA CGTTACGCCG AGTCCGACAG TGAACGTTAC GCCGAGTCCG
ACACCCGGTG CGAACATCAC CGAACAGATC GTCGAGGGCC TTTCGGACCA GGAGAACCTG
ACGACGTTCG TTGAAGCGGT GAACAACTCC ACTATCGGCG AGGAACTCGA CGAGAACGAG
AGTTACGTGA TGTGCGCTCC GACCGACGAT GCGTTTTCCG GGCTGGGCAA CCGGACGCTC
TCGGTGATCA TGGGCGACAC GATGCTCTTA AACAAGATCC TCAGTTACCA TGTCATCCAG
GGTGATTACA CGATCGAAGA GCTCGTGCAA CTCTGCGAGA ATTCGACCGA CGGGCAGATC
TCCCTGCCGA CCGCTGAAGG ATCGGAGGTT AATGTCTCGC TCACCGAGGA CGGTCAGCTG
ACCATCAACA ACATCATCGT TGTGACCCAG ATCCAGATCA CGAACTACAT CGTGGTCTAC
GTGATCGACG GTGTCCTGGT TCCGCCGGAC ACCCCGATCC CAACCCCAAC ACCGACAGTG
ACACCAACCG CGACACCAAC GGTGAACGTT ACGCCGAGTC CGACGGTGAA CGTTACGCCG
ACTCCGACGG TGAACGTTAC GCCGACTCCG ACGGTGAACG TTACGCCGAC ACCAACGGTG
AACGTTACGC CGACTCCGAC GGTGAACGTT ACGCCGACTC CGACGGTGAA CGTGACCCCG
ACGCCGACAA CGCCGGAGGA GACCATGGAT CTCCAGCTCT ATGAAGGCTG GAACTTCGTC
TCTATCCCGA GATCGCTCTC TGCGGGAAAC GATACCGCAG CGTCGGTCTT TGCGGACGTC
GACACCGGCG GGCGGTCGAT CTACACCCAT ACCCCGGCAG GCGGCTTCGA GCCCCTGGGC
GAGAGCGAGA TCCTGGAAGT CCTTGAGGGA TACTGGGTCT ACTCGACCGA GGAGACGACC
GTGCAGCTGA TGCTCAGCAC CGACCCGGTG AGGGCACCCG CACTGAAGAC GCTCAGCCCG
GGCTGGAACG CCATCGGCTA CTCCGACCTG ACGGAGCGCA GTGCGGACGA GGCGCTCATA
TCGGTGGAAG ACAACTGGGT CTACGTCGTC GGCTACGATG CAGAAGAGCA GAGTTACCGG
CCGGCGCTCA TCAACAATGT GACCGGTGAC CAGGGGGAGA ACCAGAGACT CTCCCCGACC
GAGGGTTACT GGCTGTTCGT GCGCGAGGAT GGCAGACTGG CTGCCATCAG CGCCTGA
|
|---|
| Protein sequence | MRRPVLFGLC IILFLSISAA SVAVSIGGGP VELNPDETVN ITPVNSTETY EVPQTTVLGA
LDAASILGSF EYQVAEDLPL DEENLSILSI TDIENEIVNE TPNNWTFWVN DEQATTGPAV
TNLTDGDNLT FSYGPPSHTL ENATYTLMVN VTVLGAVVTP TPTVNVTPTP GANVTPFVNV
SDQPIENDTV IVDNATINQT GWADIHADLN GTPGPIIGYS QITEGVNENV SVEIEVENAT
PVLYAMLHID AGEPGVHEFP GPDVPILVNG SPVQQAFNVT GGLPEENVTP TPTVNVTPSP
TVNVTPSPTV NVTPSPTVNV TPTPTVNVTP SPTVNVTPSP TVNVTPSPTV NVTPTPTVNV
TPTPTVNVTP SPTVNVTPSP TPGANITEQI VEGLSDQENL TTFVEAVNNS TIGEELDENE
SYVMCAPTDD AFSGLGNRTL SVIMGDTMLL NKILSYHVIQ GDYTIEELVQ LCENSTDGQI
SLPTAEGSEV NVSLTEDGQL TINNIIVVTQ IQITNYIVVY VIDGVLVPPD TPIPTPTPTV
TPTATPTVNV TPSPTVNVTP TPTVNVTPTP TVNVTPTPTV NVTPTPTVNV TPTPTVNVTP
TPTTPEETMD LQLYEGWNFV SIPRSLSAGN DTAASVFADV DTGGRSIYTH TPAGGFEPLG
ESEILEVLEG YWVYSTEETT VQLMLSTDPV RAPALKTLSP GWNAIGYSDL TERSADEALI
SVEDNWVYVV GYDAEEQSYR PALINNVTGD QGENQRLSPT EGYWLFVRED GRLAAISA
|
|---|
| |