| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1146 |
|---|
| Symbol | |
|---|
| ID | 4847290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | - |
|---|
| Start bp | 1126688 |
|---|
| End bp | 1130521 |
|---|
| Gene Length | 3834 bp |
|---|
| Protein Length | 1277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640115835 |
|---|
| Product | SecC motif-containing protein |
|---|
| Protein accession | YP_001047059 |
|---|
| Protein GI | 126179094 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3318] Predicted metal-binding protein related to the C-terminal domain of SecA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.3417 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACATCT TTGAGAATCA TAGTAAAGTT GGCAGAAATG ATCCTTGTCC ATGTGGAAGT
GGTAAAAAGT TTAAAAAATG CTGTATCGGA TCTTTTAGAC CACTACCATC TCCCAGAAAA
GCAGAGTTGG GATTATTAAA AAGTGAATTC AGAAAATATG ATCCAAAAGA AATAATTTCA
ACACTAGCAG GACTTCATCT ACACCCAGAA AACCATAGCC ATACAGTACG CCTCGAAGTT
GCATCACATC TAGCCTGTTC TTTAAAGCAC GGGGGGAAAG ACAAGATAGA TCCAGATCGT
CTGAAGAATA AGTTAAATGA ATATTTAGAT CCTTTTTGTG AAGTTGGAGT CCTAGAAGAC
CCTCCCGAGC AATTATTTAC CGAGAATATC GAATTTTACG GCGGGAACTA TATTATTTAC
CCCGGAATTT ATGATTGTGA ACCTTTTGTC TTACGAATGC TTTTCAAAAC TCTTTTTCTC
GAGGGAAATG AATATCCACA AGAATTCCTG GATACCATTT ATGCGACCTC GCGACTTATA
CTAAGTCTAA GTAATGAAAT CGCAAAACGA TTAAATCAGT CACGGTACAT GGTCAGTCCA
TCAAACTGGC ATCAAAAAAT TGATGTCCCA GAGGAAAATC TTCTTGCAAA ATATAGGTGC
TCGGTAATAT TTTCGAATGA AGAACTTGAA GAACTGCTTA ATCGTATAAA TATTGATTCA
CGTTTCCTTG CACCATTTAC CATTTCTGTT GGCGATCCAG CATTTAAGAA AAGGAATATC
AAGAAAAATC CTCTCTTTAT CACGCCAATT GTCAAGTTTG AAGATGATAT AATTGTAGCA
CATCCAAGTT CACTGGCCGC TGCGTTAAGG CATTTCATCT GGAATATCTC TGGAAAATTC
AAGTGCCGTG ACATCCTTGC AGAAAACTAC CGTAAAAGTG TATTTATGGG CATGAAGGAG
TCGCTTGAAT TAATCGGATT CTATGAAGTG GATATTTCGT TGCCACCGAT AAATGATGAG
CGCCTTATCA TAGAAGAGAG TGTATACCAG GTTGACACAG ATAAACTTGT ATATGTTATT
TTAATCTGTG ATGATGCGAA AAACTACCCC AGCAAGGATA TAAATGGCGA ATGGAACGCG
CTCAAACTAG AAGAGATTAT TATAAGCAGA GTATGTCAAA TTTTCGCCTA TTTGAAGAGA
GAGCTAGAAT ATTGTAATGA GATCTTAACT TTAAGAGTGT ACGGAAAAAT TGGCCGAAAT
TTTAAAATTA TCATTGATGA CCAAAGTCAC CTAACACTCT CTCTATGTGC CGATGAGTTG
GAGTTGCTCT CACAATTAAG AAAGTGCGAA CCGCTTACAT TGTGGAAATT TGCAGAGGCA
TATACAAATT TTGCCAAATC CAATGATATA TTTTCTTGGT CATTTCTCGA CACGTTTAGT
GGCTACATCC AACATAATTA TTCGTTTAGT GCAGGAGATA AAAATGAACC AATCTTACTT
GATATTCTCG CAGGGACTGG CCGAGACCTG AGGATAAAAG CCACAAAAAA GTTTGACTTT
CATTCAGCCA AAAAAGGGAA TCCATCAGGA TTTATCACAG TCTGCAAAGT CTCTGAAGAT
GAATCTGATG AGATATATAC TCCATATTAT CGCATAAACA GATCATTAGT CCGTCTCGTT
GAAGGGTATG ATCAAGCAAT CTGGATCGAA CCGCAATCAA CCGAGCATTC TCCTGAGCAG
TTAGCCCTCT ATACTTTAAT ATCTGACACT ATCAGCTATT GGGTTTCGCA AATTAAACCT
AGCATTAAGC CATTGTTATC CAGTACAGGC ACAGATCCTA TTGAAATTAG ATATGAATTA
GAAAATTTTC ATCTCTGGTT AAATTGTGAA TTTGATGATC TGAGTGATGT CACGCCTAAA
TGCGATTTTA TCATCGAAGG GCGTTCAATT CTATTTTCAA TCCCCCATAC AATAGTCCCA
TATCTTAAAA GAGCGAATAA CATCGGAGAA AGAGTCATCT TGAATTCATT GTTAGAAGCG
ATAGATGGAT TTATCATTCA ATCAAGTGGA AAACACGTAT TGAGTAAAAC GGAAAGGCGT
ACTATTATTG AGTTCCATGC TCCACTTGGA CTCAAGAAGA AAATTCTAAT TGCCGGAATT
GAAGCAGATG GACTCCTTTT CCAAAACTTC ACTCCTCCAC CACGTTTGAT TCAAATGCAC
GATCTTGAAG CACAGGAAGA AAATTTGGTT GAGGACTTGG GGTGTGAATT TTCAATTGGA
GAATATTCAG ATAAAGCCGA ACAAATGAAA ATATGTGGGA AAGTCGTGGA TACGTATCTA
AGGCGAATAA GAGAATCTTT AAAGCAGTTT TCACATGAAT CGCTTCTTCA ATACCTTATT
GGCTCCTATG AAGGCTTGCT GCATTATCAA GCCTATATTC AGTTTTCTAC ACCTCAAATA
ATTTCTTGTT ATACAGATGT AGATGAGCTC GCCACCGAAA TGATCAAAGA CATTCCGAAT
ATTAATTCAA CATCTCTCAG TACAAGAGTT CTTATTGAGA TCATCGCAGC TGAGCCTCCT
GCGGGAGATC GAACGATTAG TATTAGTGAA TTAGATAAGC TACTTGCGTT GACATCACAT
CTGATCAATT GGGCTGACAT CAGCGATAGA ATCCACTTTG ACTTTGTACA GATCAAAATT
ATTCTACTGG AAAATGGCCG CATTAGGTGT GAGAGTCTTG GTGATACAAA CTTTGACGCG
CCTTTTTTAC GTGCAAAAAC TTTAGAAGGA ATCGAATCGG CTCTATTACA TTCAACGGAT
CAGGATAAAT CTACAGATGA AAGAGCAGCA TTTAGAATAG ATTCGAGATA TGATACAGCA
TTCAATGCAG AATTTGGGAT TAGTCTTCAA GAGGTTGGAC AGTTCATCAT CTGTTTAATT
CACAGTTGTG ACCATTTTAT CTGTGCGGAA CAGAACTCAC CAGCGTTATC GTTACCAGTG
TCTGAATTTA AAAAACGGAT CATTTCGACC CTGAATTGGC CTGAAGATCG CGTTATAAAA
GCAATCAACC TATTCTCATT AAGCCCAAGA GAAAAATGGG ATCTCGCTCC CGAAGGCTTC
ACATTAAATG AGGATATTCT CCCATGGAGA TATAACCGGA GATTGTCGTA TCTTCGGAGA
CCCCTTATCA TTGGTCCAGA AACTGATACG GAACCAATGA TCTTCTGGGG ATCGCTTCAT
GTAGAGTCTT CATTTAACTA TCTGGCTGAA TTGATAGACT CTGGACGTTA TAAAAATCCA
CAAGGCATGT CCGAAGAGAT GCAAAAATTA CTCGGCGAGA TCAAACGAGA AAAGGGAAAA
TTTTTCGTGA GCAAAGTTCA CAAATGGTTT GAAGATAATA CTGAATATAT CGTTGATTCA
AATGTCCCTA TAGCTCCTAA TGAAAAATTA GACTCGCCAA GCAATTTAGG AGACATTGAT
GTATTACTCA TAGATATCGT TCAAAAAAAG ATTTTCTCAA TTGAGTGTAA AAATATCAAT
TTCGGTCGAA ATGCGAGGGA AATTGATAAT GAAATGACCA GATTTATAAT CGATAAGGAG
AAACGAAAAT CTTGGGCAAG TAAACACATT GATCGCGACG AGTGGTTAAA AAACAACGTC
AAAAAGGTTG CTTCAGCATA TAATCTCGAT TCAAATTCAT ATGATGTCAT TTCAATTTTT
ATGTTATCTG AGTCCATATT CACATCGATT TTTCAAAAGA TTCCTTTACC CACATTTTCA
TATCCACAGT TGTTACGTGA TGGAGTGAAA TTATTTGACC CACTCCTACA ATAG
|
|---|
| Protein sequence | MDIFENHSKV GRNDPCPCGS GKKFKKCCIG SFRPLPSPRK AELGLLKSEF RKYDPKEIIS
TLAGLHLHPE NHSHTVRLEV ASHLACSLKH GGKDKIDPDR LKNKLNEYLD PFCEVGVLED
PPEQLFTENI EFYGGNYIIY PGIYDCEPFV LRMLFKTLFL EGNEYPQEFL DTIYATSRLI
LSLSNEIAKR LNQSRYMVSP SNWHQKIDVP EENLLAKYRC SVIFSNEELE ELLNRINIDS
RFLAPFTISV GDPAFKKRNI KKNPLFITPI VKFEDDIIVA HPSSLAAALR HFIWNISGKF
KCRDILAENY RKSVFMGMKE SLELIGFYEV DISLPPINDE RLIIEESVYQ VDTDKLVYVI
LICDDAKNYP SKDINGEWNA LKLEEIIISR VCQIFAYLKR ELEYCNEILT LRVYGKIGRN
FKIIIDDQSH LTLSLCADEL ELLSQLRKCE PLTLWKFAEA YTNFAKSNDI FSWSFLDTFS
GYIQHNYSFS AGDKNEPILL DILAGTGRDL RIKATKKFDF HSAKKGNPSG FITVCKVSED
ESDEIYTPYY RINRSLVRLV EGYDQAIWIE PQSTEHSPEQ LALYTLISDT ISYWVSQIKP
SIKPLLSSTG TDPIEIRYEL ENFHLWLNCE FDDLSDVTPK CDFIIEGRSI LFSIPHTIVP
YLKRANNIGE RVILNSLLEA IDGFIIQSSG KHVLSKTERR TIIEFHAPLG LKKKILIAGI
EADGLLFQNF TPPPRLIQMH DLEAQEENLV EDLGCEFSIG EYSDKAEQMK ICGKVVDTYL
RRIRESLKQF SHESLLQYLI GSYEGLLHYQ AYIQFSTPQI ISCYTDVDEL ATEMIKDIPN
INSTSLSTRV LIEIIAAEPP AGDRTISISE LDKLLALTSH LINWADISDR IHFDFVQIKI
ILLENGRIRC ESLGDTNFDA PFLRAKTLEG IESALLHSTD QDKSTDERAA FRIDSRYDTA
FNAEFGISLQ EVGQFIICLI HSCDHFICAE QNSPALSLPV SEFKKRIIST LNWPEDRVIK
AINLFSLSPR EKWDLAPEGF TLNEDILPWR YNRRLSYLRR PLIIGPETDT EPMIFWGSLH
VESSFNYLAE LIDSGRYKNP QGMSEEMQKL LGEIKREKGK FFVSKVHKWF EDNTEYIVDS
NVPIAPNEKL DSPSNLGDID VLLIDIVQKK IFSIECKNIN FGRNAREIDN EMTRFIIDKE
KRKSWASKHI DRDEWLKNNV KKVASAYNLD SNSYDVISIF MLSESIFTSI FQKIPLPTFS
YPQLLRDGVK LFDPLLQ
|
|---|
| |