| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1139 |
|---|
| Symbol | |
|---|
| ID | 4846093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | + |
|---|
| Start bp | 1119615 |
|---|
| End bp | 1120751 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640115827 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001047053 |
|---|
| Protein GI | 126179088 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACTCTG AACCTCCCGG TGAGCGGGAC GCGCTCCGCG AGAAGATCAT CGGCCTCGGG
GAGACGTCCC TGCACAAGAG TTACTATCCC GAACTGCAGA GACGGCTTGC GGAGCTCGAA
CGGTTCAGGG CGCTGCTCGA CCAGACGCAC GACGCGATAT TCCTGATCCG TGCGGAGACC
GGGAGACTTG CGGACGTCAA CGCATCCGCA AAGGCGTATC TCGGCTACTC GAAGAAGGAG
CTGCTCAAAA AACTGTTCGC CGACCTGATC TCCCCCTCAA AACAGGCTCA ATTTTCCGAG
TTCCTCATGG ATTGCAGCAA TCTGCCGTCC GAATTCCGGC AGGCCTTCAC CGCGCCGCTC
GTAGCGCGGG ACGGAACGGA GATCCCGATG GAGATCACCG TCCGGTCGGT CACCTTCGGC
GCCGAGCAGT ATATCGTCGC GATTGCACGG GACATCACTG ATCGGATCCA CACCGAGAGG
GAGCTCAGGA TAAAGGAGAG CGCGCTCGAA TCCTCGACGA ACGGCATCCT CATCGCCGAT
CTCACCGGAG CGGTCATGTA CGCCAACCGG AGTTTTACCG CGATGTTCGG CTACGAGCGG
GAGGGCACGA TTACGGGGAG AAACCTGGAG GCGTTCTTTG CGGACCCCAC CGTCGGGGAG
AAGGTTACGG CCCATCTCCT CGACAACCCT GCGATCGTGC AGGAGACGGT CGGGCTGCGG
AGCAACGGCT CTCCGTTTCA CATCCAGATC TCGGGCAGCG TCGTCCAGAA CGATGCCGGG
CAGCCGCTCT GCATCATGCT GATCGTGATG GACATCACCG AGCGCATCCT CACCGATCAG
ATGAGGCGGG AGACCTACGC GCAGCTCGGG AAGAATATCG AGCAGTTTGC CATCCTCGGG
GACCATATCC GGAATCCCCT GCAGGTGATC GTCGGGTACG CGGAGATGAT CGACGACCCG
TTTGCAGAGA AGATCCTCGC AGAGTCGCGC CGGATCGACG GCTTCGTCAC CGAACTCGAC
CGGGGATGGA TCGAGTCGGC GAACGTCAGG CAGTTCCTGC GACGGCACGG GGACGGTGCA
AAGCCCCCCG GGGAGACGTT TTTCCGTTTT TCGAATTGGA AGGAAGAAGA TCCCTGA
|
|---|
| Protein sequence | MHSEPPGERD ALREKIIGLG ETSLHKSYYP ELQRRLAELE RFRALLDQTH DAIFLIRAET
GRLADVNASA KAYLGYSKKE LLKKLFADLI SPSKQAQFSE FLMDCSNLPS EFRQAFTAPL
VARDGTEIPM EITVRSVTFG AEQYIVAIAR DITDRIHTER ELRIKESALE SSTNGILIAD
LTGAVMYANR SFTAMFGYER EGTITGRNLE AFFADPTVGE KVTAHLLDNP AIVQETVGLR
SNGSPFHIQI SGSVVQNDAG QPLCIMLIVM DITERILTDQ MRRETYAQLG KNIEQFAILG
DHIRNPLQVI VGYAEMIDDP FAEKILAESR RIDGFVTELD RGWIESANVR QFLRRHGDGA
KPPGETFFRF SNWKEEDP
|
|---|
| |