Gene Memar_0060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMemar_0060 
Symbol 
ID4846715 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanoculleus marisnigri JR1 
KingdomArchaea 
Replicon accessionNC_009051 
Strand
Start bp56275 
End bp57963 
Gene Length1689 bp 
Protein Length562 aa 
Translation table11 
GC content65% 
IMG OID640114731 
ProductTPR repeat-containing protein 
Protein accessionYP_001045977 
Protein GI126178012 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACTCC CCTGGAAGAG CGTCGAGGCC TGGTGCAAAA AAGGGCGTGC ATACGCCGAG 
CAGGGGCAGT ACGACCGGGC CGTCGAGTGC TACGACCAGG CCATCCGCCA GAACACCGGC
GCCGGCGACG CCTGGTACCA TAAAGGGCTT GCCCTCGCGG CCGCCCGGCG CCACCGGGAA
GCGCTCGAAT GCTTCGACCA GGTGGTCAGG ATCGACCCGA CCTGCGGCCG GTTCTGGCTG
GCCCGGGGGC AGACGCTCTA CGACCTCGGG GAGTGCCGGG AGGCGATTGG TTCCTGCGGC
CAGGCGGTGA AACTCGCGCC GGACTCCGCG AACGCCTGGT TCATCCGGGG CCACGCCCTC
AGAAAGATCG GGCTTTCCCC CGAGGCAATC GAGTGCTACG ACCGGGTGGT CGCGCTCGAA
CCGAACCGGA TCGATGCCTG GCTCGCTCGC GGCACGGCGC TTGCCGCCGA ACGCCGATAC
GAGGCGGCGA TCGAGTGCTA CGACCGGGTG GTCGCGCTCG AGCCAAAAAA CGCGAACGCC
TGGTACGCCA GAGGGACCAT CGAGACCCTC CTCTCCCGCT ACGAGGACGC GATCGCCTCC
TACGGCCAGG CCGTCGCCAT CGACCCGAAC CACGCCGAGA CCTGGTACAA CCGGGGATGC
GCGCTTTCGG CGCTCAAGCG CTACGACGAG GCAATCGGGT GCTTCGACCG GGCGATCGCC
CTCCGCCCCG ACGACGCCGA GACCTGGTAC AACCGGGGCC GCGCACTGCA GAATCTGGAG
CGTTACGAAG AGGCGCTCGA CTGCTACGAG CGGGCGTTCC GGATCAACCC CGATTATCCC
GGTATCTGGA ATCACAAGGC CACGGTGCTG AAGAAGCTGA AACGCTACGA CCTCTCGCTC
GCCTGCTTCG ACCGGGCGCT CCGGGTGAAC GCCGTCGACG CGGAGATCTG GCACCAGAAG
GGCCTGCTCT ACTTTACCCT GAAGCGCTAC GGAGATGCGA TAGAGTGCCT CAGTCAGGCG
CTCAAACTCC AGCCCGGTCA CACTGACGCA GAATACTACC GGGGCGAGAG TTACTACGCC
CTCGGGAACT GCGAGGCCGC GATCGACTGC TACCGGGCCG TGGTCAGGCT GAATCCCGAG
AACGCCGTAG CCTGGAACAA CTGCGGCAAC GCACTTTACC ACCTCAAGCA CTACGAGGAG
GCACTCGTCT GTTACGAGCG GGCGCTTGAG ATCGACCCGG AGAACCGCCG GGTCTGGAAC
AACAAAGCGA GCGTTCTCTC CGTTCTGTCA CATTACGACA AGGCGCTCGT ATGCTACGAC
CAGGAACTCC TGGCCCACCC GGAGAACGCG GACGCCTGGT ACAATAAAGG GGTCGCGCTC
TTCGTCCTCG GGCGGTACAG CGAGGCCGTC ACCTGCTATG CCCATGTGCT CGAGATCGAT
CCCGCGAGAG CCGAGGTCTG GAACACGATG GGGAACGCAC TCGTGATCCT GGAGCGCTCC
GAAGAGGCTC TCGAGTGCTA CGACCTGGCG CTCGCCGCGA GCCCCGACGA CATCGAAGCG
CTCAACGGGA AGGCGGTGGC CCTCATAAAT CTCGACCGTC CCGCCGAAGC GGCCAAATAC
TACGAGAGGC TGCAGCGGCT GCCGGCATGG CAGCGAGAAC GGAATTCGGG AAAAAGGAAG
GGGCTTTAA
 
Protein sequence
MELPWKSVEA WCKKGRAYAE QGQYDRAVEC YDQAIRQNTG AGDAWYHKGL ALAAARRHRE 
ALECFDQVVR IDPTCGRFWL ARGQTLYDLG ECREAIGSCG QAVKLAPDSA NAWFIRGHAL
RKIGLSPEAI ECYDRVVALE PNRIDAWLAR GTALAAERRY EAAIECYDRV VALEPKNANA
WYARGTIETL LSRYEDAIAS YGQAVAIDPN HAETWYNRGC ALSALKRYDE AIGCFDRAIA
LRPDDAETWY NRGRALQNLE RYEEALDCYE RAFRINPDYP GIWNHKATVL KKLKRYDLSL
ACFDRALRVN AVDAEIWHQK GLLYFTLKRY GDAIECLSQA LKLQPGHTDA EYYRGESYYA
LGNCEAAIDC YRAVVRLNPE NAVAWNNCGN ALYHLKHYEE ALVCYERALE IDPENRRVWN
NKASVLSVLS HYDKALVCYD QELLAHPENA DAWYNKGVAL FVLGRYSEAV TCYAHVLEID
PARAEVWNTM GNALVILERS EEALECYDLA LAASPDDIEA LNGKAVALIN LDRPAEAAKY
YERLQRLPAW QRERNSGKRK GL