| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_3540 |
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| Symbol | |
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| ID | 4899099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17029 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009050 |
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| Strand | + |
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| Start bp | 624712 |
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| End bp | 627891 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640114149 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001045403 |
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| Protein GI | 126464290 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.468941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCAC CGATCGGCCT CGAGGTCCTG CGGCTTCTGG ATCTCGGCAT CTCGAAGGCA
GCACACCTGC ACATTACCTC GGACGATGCC CGCGCGGAGG AGATCGTCCG GTTCCTGCGG
GAGATCGCGC CCGAACTCCG GCCGGATGTC TTTCCGTGCT GGGACTGCCT TCCCTACGAT
GGCGCCTCGC CCACGCCCGA TGCGATGGGG CGTCGCATGG CGCTGCTCGA TGCGGTGCGG
GCAGGCGACG TCCGGCTCGT CATCGTGGGT CCGTCGGGTC TCCTGCAGCG AGTCCCACCG
GTCGAGGCGA TGCGCCGCTT CGCGGTGCGC GCGGGCGAGG CCTCGGATCT CTGCGCCCTG
CGCACCTTCG CCGCCAGAGC GGGATATGCG GAGGACGACC GTATCGACGA GCCGGGAGAG
ATCGCGTTCC GCGCCGAGGT GGTCGAGGTG TTTGCGGCGG GTGCGGAGCG ACCGGTGCGG
ATCGGCCTCG AGAAAGACCG CGTGACCGGG ATCCGCCGCT ACGATCCGGT GTCGCTGCGC
TCGATGGAGG ACGTGCCCGA AATCGATCTG CTGCCCGTGA CGGAACTGCC CGAAAGCGCC
TTCGCCGAGG GGCCTCCGCC CCGGGGAGCC GAACATCGTC TGCCCCGGGC TTGGCCCTCG
CTTGCAACGC TGCCGGATCA TCTCGGGCAG GGCGGGATTT CCGTGACCCC CGGCGCCCTC
GCGGCGCTCC GCCAGGCCCG CGCGCAGATC GAGGAAGCGC ACCGCGACCG CGAGAGTCTG
GGTGAGGGCG AGACGCTGCC GCCCGATGCG CTCTACCTCG GCGAGGAGGA TCTTGCCGGG
ATCCTCGCGC AGGCCGAGAC GCTCGACCTG TCGGGCTGGG AGCCCGTTCC CGCCTTCGCG
GAAGACCGGC GACCGCGTGC GGCGCTCGCC CGGTTTGCGC GCGGCCAGAT CGGGGAGGGC
CGCCGGGTGG TTCTCCTTGC CGCGACCCCG CGCGACCTCC GGGCGCTGGG GCGCGCCACC
GGGGCCGCGG ACCCGGCGCA GGACTGGCAG GACGCGCGCG CCACGCCGGA GGATGTCCCG
GCGGCGATCC TCTCTACTCT GGCCCGCGGC TTCGTCGACC TTCCGGGGCG CACGGCCGTC
GTCACGGCGC GGGATGTGCT GGGCAGCCGG GCCGCGGAAG ACGCGGCCGT GTCGGCGGTA
TCCGCATGGC AGGTGACGCC GGACGCCCTC GCCGAAGGGG ACTTCGTCGT GCATGAGGAC
AGGGGTCTCG GGCGCCTCCA GGGCCTCGAG CCGCTGCCCG GCGCGGACGG CCGCGAGGCG
ATCCGCCTTG GCTATGCGGC AGACCAGCAT CTCCTCGTGC CGGTCGAGGA GGCCGGCCGG
ATCTGGCGGT ATGGCACCGG CGCCGATGTG TCCCTCGATC GGCTCAACGG TGCGGCATGG
ACGAACCGCA GGAAGAAGCT CGACGAAGGA ATCGCCGAGG CGGCGCGCGC GCTCGTCGCC
GCGGCGAAGG AGCGGGCGGC CAAATCGGCG CGGGCCTTTG AGCCGCCGTC CGACATCTAC
GAGCGCTTCG CGGGGCGCTT CCCCTTCACC CTTTCTCCCG ACCAGCGTCG CGCCATTGCC
GAGGTTCGAG ACGATCTCGT GGCGGGGCGG CCGATGAACC GGCTGGTCCT CGGCGATGTG
GGGTTCGGGA AGACCGAGAT CGCGCTGCGG GCCGCGGCCG CCGTGGCGCT CTCCGGCGCG
CAGGTTGCGC TGGTGGCGCC CAGCACCGTC CTCGCGCGGC AGCATGCCGA GACCTTCCGC
CGCCGCTTCG AGGGCTTCGG CGTGACGGTG GCCCATCTTT CGCGTCTCGT GCCGTCCAAG
GAGGCGAAGG CCGCGCGCGA CGGGCTCCGC GACGGGTCGA TCCGCATCGT CGTGGGCACC
CATGCGCTGC TCGGCAAGGG CGTGGCCTTC GCCGATCTCG GCCTCCTGAT CGTGGATGAG
GAGCAACGGT TCGGTGCGGC CCACAAGGCG CGGCTCCGGG CGCTCGGCGC CGACCTGCAT
GTGCTGACGA TGACGGCCAC GCCGATCCCG CGGACATTGC AGACTGCCCT CGTGGGCCTG
CAGGACCTGA GCGAGATCGC GACGCCGCCC GCCCGGCGGC GCGCCGTGCG CACCCTGACC
GCCGAGGAGG ATGCGGCCGT CCTGCGGCAG GCGCTGCTGC GCGAGCGGCG GCGGGGGGGC
CAGAGCTTCG TCATCGTGCC GCGGATTGCG GAGATCGATG CCACCGAGGC GCGCCTCCGC
GACCTCCTCC CGGAGGCGCA GCTCCGCGTG GCGCATGGCG ACCTCGCGCC GGAAGAGCTC
GACCGCGCGA TGGTGGACTT CGCCGCCGGT CGGGGCGACA TCCTTCTTGC CACGAGCATC
GTCGAGGCCG GGCTCGACGT CCCGCGCGCG AACACGATGA TCGTCATGCA GCCGCAGCTT
TTCGGCCTCG CGCAGCTCCA CCAGTTGCGC GGTCGCGTGG GTCGCGGGGC GCGACAGGCC
TACTGCTATC TGATGCACGG GCCGGGAGAT GATCTTGACG AGGCGGCCCT GCGGCGGCTC
GGCACGCTTC AGGCTTTCGA CCGGCTGGGC GCGGGGGCCG CGATCGCGGC CGAGGATCTC
GATCAGCGGG GGGCGGGAGA GCTGTTCGGA GAGCGGCAGT CGGGGCACGT CAGGCTCATC
GGGCTGCCGC TCTACCAGCA TCTCCTTGCG CAGGCGGTGC GCGCCGCGCG AGGGGAGCCG
CCGACGGCCC AGCACGTCTC CCTCGCGATG GAGGCGGAGG GCGCGCTGCC GGCCGACTAC
ATTCCCGAGG CGGGCCTCCG CCTCGGCCTC TATCGCCGCC TTGCCCGGGC GGCCGATCCG
CGCGAGGTCG CGCTGCTGGC CGACGAGATC GAGGATCGCT TCGGCCCGCC GCCGGCCGCG
GCTGCCGGTC TGCTCGTCGC GGCGGAGATC CGGGCGCTGG CGCGGAGCCT GGGGATCGAA
CGGGTCAGCG CGGGGCCGTC CGGTGTGGCG CTCGACCTGG CGCCGGATGC CTGCGTGGAG
CGTTTCGCGG AGGATCTGCC CGAGGGCGTC ACGCTCGAAG GCCGGCGGCT TCTGCGGCAG
GAGGAGACGG ACGAGGATGC CGCACGCCGG GCGCTGGATC TTCTGCGCGA TCTCGGCTGA
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| Protein sequence | MKPPIGLEVL RLLDLGISKA AHLHITSDDA RAEEIVRFLR EIAPELRPDV FPCWDCLPYD
GASPTPDAMG RRMALLDAVR AGDVRLVIVG PSGLLQRVPP VEAMRRFAVR AGEASDLCAL
RTFAARAGYA EDDRIDEPGE IAFRAEVVEV FAAGAERPVR IGLEKDRVTG IRRYDPVSLR
SMEDVPEIDL LPVTELPESA FAEGPPPRGA EHRLPRAWPS LATLPDHLGQ GGISVTPGAL
AALRQARAQI EEAHRDRESL GEGETLPPDA LYLGEEDLAG ILAQAETLDL SGWEPVPAFA
EDRRPRAALA RFARGQIGEG RRVVLLAATP RDLRALGRAT GAADPAQDWQ DARATPEDVP
AAILSTLARG FVDLPGRTAV VTARDVLGSR AAEDAAVSAV SAWQVTPDAL AEGDFVVHED
RGLGRLQGLE PLPGADGREA IRLGYAADQH LLVPVEEAGR IWRYGTGADV SLDRLNGAAW
TNRRKKLDEG IAEAARALVA AAKERAAKSA RAFEPPSDIY ERFAGRFPFT LSPDQRRAIA
EVRDDLVAGR PMNRLVLGDV GFGKTEIALR AAAAVALSGA QVALVAPSTV LARQHAETFR
RRFEGFGVTV AHLSRLVPSK EAKAARDGLR DGSIRIVVGT HALLGKGVAF ADLGLLIVDE
EQRFGAAHKA RLRALGADLH VLTMTATPIP RTLQTALVGL QDLSEIATPP ARRRAVRTLT
AEEDAAVLRQ ALLRERRRGG QSFVIVPRIA EIDATEARLR DLLPEAQLRV AHGDLAPEEL
DRAMVDFAAG RGDILLATSI VEAGLDVPRA NTMIVMQPQL FGLAQLHQLR GRVGRGARQA
YCYLMHGPGD DLDEAALRRL GTLQAFDRLG AGAAIAAEDL DQRGAGELFG ERQSGHVRLI
GLPLYQHLLA QAVRAARGEP PTAQHVSLAM EAEGALPADY IPEAGLRLGL YRRLARAADP
REVALLADEI EDRFGPPPAA AAGLLVAAEI RALARSLGIE RVSAGPSGVA LDLAPDACVE
RFAEDLPEGV TLEGRRLLRQ EETDEDAARR ALDLLRDLG
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