Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17029_2980 |
Symbol | |
ID | 4896093 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17029 |
Kingdom | Bacteria |
Replicon accession | NC_009049 |
Strand | + |
Start bp | 3140952 |
End bp | 3141734 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640113583 |
Product | type III secretion system inner membrane R protein |
Protein accession | YP_001044854 |
Protein GI | 126463740 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.751206 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACGC TTTTCGAACG GCTCGCAGAA CTCGTCCTGT TGGCGCAGGA TCTGTTCCGC GGAGGCTTCC TTGTCTTCCT GAGGGTAGGA GCCGCCATGG CGCTCCTGCC GGCGTTTGGC GAGACGAGCC TGCCCGTCCG GGTGCGGCTC GCCGCCGCCC TGGCCTTCAC TGCGATCGTC TTTCCGGCGG TCAGCGACCG CGTCCCCACT TATGACAGCA CCGTCGCCCC TCTTCTGACG GAGACAGCGG TGGGGCTGCT TCTCGGCGCT TCGCTCCGGC TCTTCGTCCT CGCGCTTCAG ACAGCGGGAA CCATTGCAGC GCAGGCGACG TCGCTGGCGC AGCTTTTCGG ATCGACTGCG GGAGAGCCCC AGCCCGTCAT GACGAATATT CTGACGCTTG CGGGACTGGC CCTCGCAGTC GCGGGCGGAC TGCATGTGCA GATCGCCCTG TTCCTCATCC AGTCGTACGA CATCCTGCCT GCGGCGCGGT TGCCCGATCC TGCGGACGTC GCGACCTGGG GACTTGCGCT GGTGGTGAAG AGTTTCGCGC TGGGCTTCAT GCTCGCGATG CCCTTCGTTG CGGCCTCCTT CATCTTCAAC GTGGCCCTCG GGATCGTCAA TCGTGCCATG CCGCAGCTCA TGGTTTTCTT CGTCGGAGCG CCTGCACTGA CCTTCGGTGG CCTCGTCCTC CTGGCGCTTG CGGCGCCGGC CGTGCTGGGC ATCTGGCTGG TGGATCTGCG TACTTTTCTC GAGGCGCCGT TCATGGGAGC GGGATCTCCA TGA
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Protein sequence | MSTLFERLAE LVLLAQDLFR GGFLVFLRVG AAMALLPAFG ETSLPVRVRL AAALAFTAIV FPAVSDRVPT YDSTVAPLLT ETAVGLLLGA SLRLFVLALQ TAGTIAAQAT SLAQLFGSTA GEPQPVMTNI LTLAGLALAV AGGLHVQIAL FLIQSYDILP AARLPDPADV ATWGLALVVK SFALGFMLAM PFVAASFIFN VALGIVNRAM PQLMVFFVGA PALTFGGLVL LALAAPAVLG IWLVDLRTFL EAPFMGAGSP
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