| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_50942 |
|---|
| Symbol | |
|---|
| ID | 4840840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009048 |
|---|
| Strand | + |
|---|
| Start bp | 151770 |
|---|
| End bp | 152825 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640392155 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001386426 |
|---|
| Protein GI | 126139808 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1635] Flavoprotein involved in thiazole biosynthesis |
|---|
| TIGRFAM ID | [TIGR00292] thiazole biosynthesis enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.920544 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCCTC CAACTAGAAT CGAAACTACC ACTTCAGTTG TAGAAGTGAA CCTTGCTAAA
GTCAGCAAGA AATCTATCAA ACTTGAGTCT CAAGCTGACA ATGCCGAAGT CACATTCGCA
GACTGGGAAA ATTTCAAATT TGCACCCATC CGTGAGTCTA CAGTTTCCCG TGCTATGACC
AAACGTTACT TTGCTGACTT GGACAAATAC ACTGAATCTG ATGTTGTTAT CGTTGGTGCC
GGTTCTGCTG GTTTATCTGC TGCTTACGTT TTGGCCAAGA ACAGACCAAA CTTGAAAATT
GCTATCATTG AAGCTTCTGT ATCTCCTGGT GGAGGGTGTT GGCTCGGTGG ACAGCTTTTC
TCGGCCATGG TGTTGAGAAA GCCTGCCCAT CTCTTCTTGG ATGAATTAGA AATTCAATAC
GATGACGAAG GAGACTATGT TGTTGTCAAA CACGCTGCTT TGTTCATGTC CACTTTGTTG
TCTAAAGTTT TGCAATTTCC TAATGTCAAG TTGTTCAACG CTACTGCAGT TGAAGACTTG
ATCACCAGAA GAGATGAGAA CACTGGTGAA TTGAGAATCG CAGGTGTGGT GACCAACTGG
ACTTTGGTTG CATTGAACCA CGACACTCAA TCTTGTATGG ATCCTAATAC CATCAACTGT
AACATTGTAT TGTCTACTAC TGGCCACGAT GGTCCATTTG GTGCTTTCTC AGCCAAGAGA
TTGGAAGAAC TCGGTAAGGC TCCTAAGGAC ATCACCCAAG GCTTCAGACC TCAAGAACGT
GCACAACCTG TTGCAGCATC TGCTGATGGT TTCCAATTGG GAGGCATGAG GGGCCTTGAC
ATGAACAAGG CTGAAGATGC CATTGTCAAG GGTACCAGAG AAGTTGTTCC AGGATTGGTC
ATTGCTGGTA TGGAATTGGC TGAAGTTGAC GGTTCTAACA GAATGGGTCC TACTTTTGGA
GCCATGGCTC TTTCTGGTGT CAAGGCTGCT GAGTCTGTGT TAAACGCTTT TGACTTGAGA
AAGAAGCAAA ACGAAACTTG CTATGGTGCC CAGTAA
|
|---|
| Protein sequence | MAPPTRIETT TSVVEVNLAK VSKKSIKLES QADNAEVTFA DWENFKFAPI RESTVSRAMT
KRYFADLDKY TESDVVIVGA GSAGLSAAYV LAKNRPNLKI AIIEASVSPG GGCWLGGQLF
SAMVLRKPAH LFLDELEIQY DDEGDYVVVK HAALFMSTLL SKVLQFPNVK LFNATAVEDL
ITRRDENTGE LRIAGVVTNW TLVALNHDTQ SCMDPNTINC NIVLSTTGHD GPFGAFSAKR
LEELGKAPKD ITQGFRPQER AQPVAASADG FQLGGMRGLD MNKAEDAIVK GTREVVPGLV
IAGMELAEVD GSNRMGPTFG AMALSGVKAA ESVLNAFDLR KKQNETCYGA Q
|
|---|
| |