| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_63672 |
|---|
| Symbol | |
|---|
| ID | 4840575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009047 |
|---|
| Strand | + |
|---|
| Start bp | 125454 |
|---|
| End bp | 127703 |
|---|
| Gene Length | 2250 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640391890 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001386041 |
|---|
| Protein GI | 150866437 |
|---|
| COG category | [A] RNA processing and modification
[D] Cell cycle control, cell division, chromosome partitioning
[K] Transcription |
|---|
| COG ID | [COG5147] Myb superfamily proteins, including transcription factors and mRNA splicing factors |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | AAAAGAGTGG AACCTGTAGA TCCATTAGCG ATATCTGAAT CGCTAGGAGT TCAGACTTTT
CGTAGAGAAA CCAGACGGCC GTTTACCAAA GAAGAGGATG ACCGTTTGAC CGAGCTTGTC
AACCGTTATT ATGGTGATAA GGTCCATGAC TTAAACTTAG ATCTGGTGGA CTGGGAGTTT
CTATCCAAGG AGTTGGAACC TAACGGTTCT AGGAAACCCA AGATGTGTCG TAAGAGATGG
GCCAATTCGC TTGATCCCAA CTTAAAGAAA GGCAAATGGT CGCCTGAAGA AGATGAATTG
CTTATACGAA CCTACCAGAA GTATGGCGCA ACCTGGCTAC GTGTAGCTTC AGAAATTCCT
GGCAGAACAG ACGACCAGTG TGCCAAAAGA TATACCGAAG TGTTAGATCC AAGCACCAAG
GACCGGTTGA AGTCTTGGAC ACAAGAGGAA GACTTGAAGT TGATCAGTTT GGTCAAGATT
CATGGCACCA AATGGAGAAC TATATGCACA AAGATAGCTG GCCGCCCAGC ATTAACTTGC
AGAAACAGAT GGAGAAAGCT TCTAACCGAC GTAGTACGAG GAAAGTCTAG CGACTTTATA
AAACGACAGG TTCAGTCCAT AACAGATGGC CTTAAGCTCG AAGCCACTGC CTCCATTTCT
AATGAAGAGG ATCAATTTAC AAAGCCAGCA GCTTCTGGTT CTATGGAAAA TTCAACTCTT
TCACAGACTT CCAAGTCTAT ACAAGCTGGT TCGTCTTCCA TACTGAGCAC GATCGCTTCA
GTCTTGTCTG CCAACTCTGT AGGCACAGTA TCGGCTTCTC CCTCTGTGTC TGCCTCCACG
TCTGTTTCAG GTATTGCTGA ACAAGCAGGT GACCAAGTTG CTCTAGCTTC CAGATCGAAA
CCAGAACAGC GTACATCGTC GGAATCTACA AGGGAGGTTG AATGGAGATA TACCATAATG
GGAGGCGAAG ATGCCGATTT GCCTCACAAG CGATTGTTCA ACAGCGAGAA CGGTGGTGCC
ATCAAGAATC AAGAAATGGT GCATTATCTA ATTTCGTATG CCAAAACTCA TGGATTGAAT
ATAACTGTCC ACCAACATAT CCACCACCAC TACTCGCCTC CACAGCATGC GGCAGTAGAT
GTGAATGGTT ACCAGCAGAC CTACCAGTCT TTATTATCGC CTGTTAATGC TATCAATCAG
ACTGATGGCT CCCATAGAGA CACCATAAGT AATGCGTCTG GATCTCCAGC TGACGGCCGT
TCTTCATCCG CATACTTACT TGAGCCTGAA ACTCAATTAA ATAGACATCA ACACTTCAAC
TACTTGCCAC CCACGACTGA AGTTCCAAAG TTGAACTCTT CACAGAACTC CCCTCATGAC
AATCCCTCGA CTCATCATCA CCACCACCAT CATCATCATC ATCATCACAA TTCATTATCG
AAGAGGAATC GAATTTTGAA TGAAAGCGAA TCTGTTGCAA AGGAGTCTGA CTTGCTCAAG
ATATTGAATC AGTCGCAAAT AGACATGACC GATACTGCTA ATGAAAGAGA AAAAACTCCT
GGTGGACATC CCTTGACTCC TTTGACGCAA GCAGTGGAAA TGGCTGCGGC TGCTGAGGCC
AATTCTAAAA AGAGAAAGAA CACAGACGAA ACGAGAAATA GCAAAAAACT TCACTACGAA
GTACCAGACG AAGAGGGTTT GGATTTTTGG GAAACTATGA GAAACTTGAC CGATCTACCC
AACCACCAGG TAATCCAGCA ATCGATGACA AGAAAGGATA AGTCTGAATA CATGGTTTCA
GAGCCGCAAA GACAACATCG ACTGCATAGG CACCAAAATC AGCATCAAAG CCAACACCAG
AGCCAGAACC ATCAGAGTCC ACATCAGCAG CAACAGCTAC ATATTCATCA GCAGTCGATT
TATGGAGATG ATCACCAGAA GCAAGTGTCG CACCATCAGC AATACTTCTC CAACAACAGT
AATGTTCAAA CTGGTGAACA AACTATCCCC GAGGGAAAGG ATAGTCATGA TATTCATAAG
AACGGAGAGG CCGAAGCGAA ACATGAAGAG ATCGATGAAG ATGTGGATCC TGAAGTGTTG
AACGCTTACG GGTTGTTCTA CAATGTATAC ACAAGAGAAG GTTCCGTGTT GCCGGAAGGA
CAGCCACAGA ACCAGCAGCC TCCAGCTCCA GGGGCTGTGT ATGATGCCTG GGGTGGAGGT
TTTGGAATCA TTCCTTTCAA TCCTTCATAG
|
|---|
| Protein sequence | KRVEPVDPLA ISESLGVQTF RRETRRPFTK EEDDRLTELV NRYYGDKVHD LNLDSVDWEF
LSKELEPNGS RKPKMCRKRW ANSLDPNLKK GKWSPEEDEL LIRTYQKYGA TWLRVASEIP
GRTDDQCAKR YTEVLDPSTK DRLKSWTQEE DLKLISLVKI HGTKWRTICT KIAGRPALTC
RNRWRKLLTD VVRGKSSDFI KRQVQSITDG LKLEATASIS NEEDQFTKPA ASGSMENSTL
SQTSKSIQAG SSSISSTIAS VLSANSVGTV SASPSVSAST SVSGIAEQAG DQVALASRSK
PEQRTSSEST REVEWRYTIM GGEDADLPHK RLFNSENGGA IKNQEMVHYL ISYAKTHGLN
ITVHQHIHHH YSPPQHAAVD VNGYQQTYQS LLSPVNAINQ TDGSHRDTIS NASGSPADGR
SSSAYLLEPE TQLNRHQHFN YLPPTTEVPK LNSSQNSPHD NPSTHHHHHH HHHHHHNSLS
KRNRILNESE SVAKESDLLK ILNQSQIDMT DTANEREKTP GGHPLTPLTQ AVEMAAAAEA
NSKKRKNTDE TRNSKKLHYE VPDEEGLDFW ETMRNLTDLP NHQSQNHQSP HQQQQLHIHQ
QSIYGDDHQK QVSHHQQYFS NNSNVQTGEQ TIPEGKDSHD IHKNGEAEAK HEEIDEDVDP
EVLNAYGLFY NVYTREGSVL PEGQPQNQQP PAPGAVYDAW GGGFGIIPFN PS
|
|---|
| |