| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_36967 |
|---|
| Symbol | |
|---|
| ID | 4840478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009047 |
|---|
| Strand | - |
|---|
| Start bp | 447982 |
|---|
| End bp | 448905 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640391793 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001386288 |
|---|
| Protein GI | 126139531 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.177714 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.228714 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTTA CCAAGTTACG TGTAGCCTAT ATCCCCGAGC ACTTCTCGAC CCCATTGATG
TTTGCCGAAA AGCACGGCTT CTACGAAAAG AGGGGACTTG AGATTGAGTT CGTAGAAGTC
ATTGAAGGTT CGGGCCGTCT TATCAAGTTA CTCAATTCCA ATGAGGTCGA CATTGCCATT
GGATTGACCG AAGCTTTTGT TGCTGATATT GCCAAAGGTA ACGATGCCTA CAAGCTTATC
GATACCTATG TTAAATCTCC ATTATTATGG GCAATCAGTA CTGGATCGAA ACGAGATGAA
TTGACCGTAG CTCAGCAATT GGATGGAAAA GCCATTGGTG TCTCCAGAAT CGGATCTGGT
TCTTATGTGA TGAGTTTTGT GTTGGCACAC AGTTTGAAAT TTGCCCACGA ATTCAGTTCT
TTCCCGATAT TGTCCAACTT CCAGAACTTG CGCGATTCTG TCAACTTGAA GTTCGGCAAT
GAGTCCGAGT TGAAGAACTC CGACGCTTTC ATGTGGGAAT ACTTCACCTC CAAGAAGTAC
TATGACAACG GTGAAATTAA GCAGATCGGC GAGATTTACA CTCCTTGGCC ATCTTGGGTG
ATCAATGCTA CTAAAAATGT CTACACTTCA AACAAGAAGG CTGTTTCTGA CTTCCTAGCT
GCTGTCAACG AAGGCATTGC TTATTTCAAC AGCCACGTCG ACGAGGCTAT CGACCATATC
GGCACTAACT TGGACTACTC TAAGGAAGAT GCCCAGGAAT GGTCCAAGAC CGTCCAGTTT
AACGACAAGT TGGGTGAAGC CGGACTTGAC TGGGAATCAG TTGTCAGCAA GACTAGTGCT
ATCTTGAAAC TTGCTGGTGT CTTGTCAGAC TCCGACGAGG TAATTGCTCA GCGTTTGGAA
GGAGGAGTAG TCAGACAATT GTAA
|
|---|
| Protein sequence | MSLTKLRVAY IPEHFSTPLM FAEKHGFYEK RGLEIEFVEV IEGSGRLIKL LNSNEVDIAI
GLTEAFVADI AKGNDAYKLI DTYVKSPLLW AISTGSKRDE LTVAQQLDGK AIGVSRIGSG
SYVMSFVLAH SLKFAHEFSS FPILSNFQNL RDSVNLKFGN ESELKNSDAF MWEYFTSKKY
YDNGEIKQIG EIYTPWPSWV INATKNVYTS NKKAVSDFLA AVNEGIAYFN SHVDEAIDHI
GTNLDYSKED AQEWSKTVQF NDKLGEAGLD WESVVSKTSA ILKLAGVLSD SDEVIAQRLE
GGVVRQL
|
|---|
| |