| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_36940 |
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| Symbol | |
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| ID | 4840472 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009047 |
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| Strand | - |
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| Start bp | 333467 |
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| End bp | 337027 |
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| Gene Length | 3561 bp |
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| Protein Length | 1157 aa |
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| Translation table | 12 |
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| GC content | 39% |
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| IMG OID | 640391787 |
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| Product | predicted protein |
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| Protein accession | XP_001386266 |
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| Protein GI | 150866611 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components
[COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.86553 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCAG TTGCTTTCAT ACAATCAATC TTTTTCAATG AATACTTGTT GAAGAATCTT
GAATTGGGTT TGGGTGTTCG AGCATCCCTC ACGTCTTTGA TTTACCAGAA ATCTTTGAAA
CTATCTTCTG AAGCTCGCCT CAAGGTCTCT TCGGGTGATA TCATAAACTT GATGTCTGTA
GATGTGAACA GAGTTCAGAG TGTCAGTCAA AATATCAGTA CTTTGGTCCT TGCTCCAGCT
GATATTGTCA TGTGTATTAT CTCCTTGTGG CCATTGTTAG GAAAGGCCAC AATGGCAGGT
GTATTTACTA TGATCTTATT GATTCCTCTT AACAGTGTTA TTATCAAATA TCTGAGAAGA
TTGAATAAAA CCCAGATGAA ATTGAAAGAC AACAGAAGCA GAATCATAAA TGAAATACTT
GTTTCAATCA AAAGTATCAA GTTGTATGCT TGGGAAAAGC CGATGTTAGC TAAATTGAGA
GAAGCTAGAA ATGAGAAAGA ATTGAAAAAC TTACGCAAGA TTAGAATTGT AAACCAATGT
GCACTGTTGG TTTGGAATTT GATTCCATTT CTTGTTTCGT TTACCTCTTT TGCTACTTTT
GCATTGACTC AAAACATTCC CTTGACATCA GAAATAGTCT TTCCTGCTTT GGCAATTTTG
AATTTGTTGT CTTCGCCTTT GCTTCAGCTT CCTGCCACCA TAACAAACAT TATTGAAGGA
TCTGTGGCTA TTGATAGAAT AAAAACATTC TTAACAAGCT CAGAAGTTGA CGAGTCCTTG
TTGAACCACA TGCCGCATCC AGCTAAAGAA AATGAAGTTG CTATCAGTAT CGAAAATACT
TCTTTCTTGT GGTCGCAGGG AACGTATTCC GATGACACAA CTGATACCCG TAGGTTTGCC
TTGAAGGACA TTAACTTTTC TGTTCGCAGA GGAGAGTTAT CTTGTATTGT AGGCAAAGTT
GGAAGTGGGA AATCGTCACT TCTTTACTCT CTACTTGGGC AGCTAATTAT GGTTAATGGA
GAAGGCAACG GCGTTCCTGC TGTTAATATT AAAGGAACTA TTGCCTATTG TGCACAACTG
CCTTGGATAA TGAATGCCTC TGTTAAGGAG AATATTCTAT TTGGATGTAG GTATGAGAAA
GACTTTTATG AGAGAACCTT AGATGCTTGT CAGCTATTGC CAGACTTAGA AGTGTTACCT
GATGGTGACG ATACGCAAGT TGGAGAGAAG GGTGTTTCTT TATCAGGGGG TCAGAAAGCA
AGATTGGCTC TAGCACGAGC AGTATATGCT CGTGCAGACA TCTATTTATT TGATGATATT
CTTAGTGCCG TTGACTCTCA TGTTGGGAAG AAGATAATCC AGAAAGTTTT GAGCAAATCA
GAAGGATTGT TGGCTCATAG TACAATAATT CTTTGCACGA ACTCTATTTC TGTATTGAGT
TATTCTGACA ACGTTACTTT AATTGAAAAG GGCCATATCA TCGAAACCAC AAGCTACGAA
GATATTAAGT TAGGAAACCA CCCTAAATTG TTCGACTTGA TTTCCGAATT TGGAAATAGT
GATATTTCCA AAACTCCCTC AGTTTCCGAA AGCAATTTCA ATGTGTTACG GGAGGGAGAT
CTGCCTTTAT TAGATATTGA CAAAGAGCCA GAAAATGATT ACTCACGGGA AAATCTATCA
TTGCTTACAA GAGCTGCTAG TATTGAGACC TTAAGGTGGG ACCCACTTAA GAAGTTATTA
CCCAACTTGC GTAGTGGTCA AATCACTGAA GAATCACAAA AAGGTAAGGT TAAATGGTCC
GTCTACCATG CCTATGCGAG AGCCTGTTCT ATTCCAGGAG TTGCTGCTTG GTTTGGCTTA
TTGATCCTTG CATCATTTGT TTCTGTTGGC GGAAACTATT GGCTCAAGTA CTGGACCGAA
AAGAATTCTC AATCAGGAAA GAACGTCAGT GTTTGGAAGT TTATCACCGT CTACGCTATA
TTTGGCTTTG GTGCCAGTAC AATGTCGGTT TTGAGAAGCT CTGTCATGAT GTTATGGTTG
GCTATAAATG CATCAAGGGA GATTCACGAT ATGATGGCGA CGAGAATTCT TCGTGCTCCA
ATGGACTTCT TCGAGAGAAC ACCCGTAGGA AGAATAATGA ATCGATTCAC TAATGATATG
AATAGAGTAG ATGATTCTAT TCCAGGTGTT TTCCAAGGTT TTGTTGTTCA ATCAATAAGC
GCGTTGATTA CTTTCGGTGT AATAGGCTTT GTAATGCCAT TCTATATCAT TGTCATCGCA
GTTCTTTCTT TGGGATACGT TTACTATGAT GTCTATTACA TTGCCTTATC AAGAGAATTA
AAGAGGTTAG TCTCCATATC AAGATCTCCA ATCTATGGTC ATTTGGGTGA AAGTTTGAAT
GGACTTGACA CAATTAGGGC ATACAATCAA GGTGTGAGAT TTGATTTCAT TAATAATGCC
AATGTGGATT GTAATCTTCA AACGCAGTAT ATGTTGAGAT CGATTAACAG ATGGTTGATG
TTCAGATTGC AGTTGATCGG GTCTCTAGGA GTGCTCGGTG CTGGATTGTT GGCGTTAATG
ACAATCTTTA CAGCTTCTCC GTTAACATCT TCTATGGCAG GGTTCATAAT GACCTACGCC
TTGGAGGTGA CTGTCTCATT GAAGATGATG GTGAGACAGT CGGCAGAAGT GGAAACAAGT
ATTGTTGCTG TGGAGAGATG TTTGGAATAT AGTACTCTCC CTGTTGAAGA AGATATAGAA
AATAAGACCT TGATTGTCCC ACCAATTCAG TGGCCAAATC GAGGTTCCAT AGAATTTGTC
AATTATTCTA CCAGATATAG AGCAAATCTT GATCTTGTCT TGCGAAACAT ATCCATGATT
ATAAATTCCG GAGAAAAGGT TGGTATTGTC GGTAGAACCG GAGCTGGTAA GAGTTCGCTT
GCCTTGTCTA TTTTCAGAAT TATCGAGGCT GTAGAAGGGA ACATCAATAT TGATGATATA
GACACTGGCT CAATTTCATT GTACGACCTA AGACATAGAC TAAGCATTAT TCCCCAAGAT
TCGCAGTTGC TAGAAGGTAC TGTCAGACAG AACCTTGATC CCTTCAACTA CTATACTGAC
GAAGAAGTGT GGAAGGCATT GAAATTGGCG CACCTTAAGG ATCATATCGT TAACTTGAAA
GAGACTGAAG GTGAAACACC AGAATCAAAG TTGGATTGTA AAGTGTATGA AGGAGGATCC
AATTTTTCAC TGGGCCAAAG ACAATTGATG TCTCTTGCCA GAGTTTTATT GAAGATGACC
AACTCGAAGG TGTTGGTGTT AGACGAAGCT ACAGCAGCCG TCGATGTCCA AACAGATAAG
ATTATTCAGG AGACGATCAG AGCTGAATTC AAGGACAAAA CGATCATCAC TATCGCGCAC
AGATTAGAAA CAGTTATGGA CTGTGACAGA ATTGTAAGTT TGGACAAAGG AGAGCTCAAA
GAATATGATA GTCCACAGAA TCTCTTGAAG AACGAAAAAA GTATATTCCA TAGTCTCTGT
AAGCAGGGTG GATATATATA A
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| Protein sequence | MFSVAFIQSI FFNEYLLKNL ELGLGVRASL TSLIYQKSLK LSSEARLKVS SGDIINLMSV
DVNRVQSVSQ NISTLVLAPA DIVMCIISLW PLLGKATMAG VFTMILLIPL NSVIIKYSRR
LNKTQMKLKD NRSRIINEIL VSIKSIKLYA WEKPMLAKLR EARNEKELKN LRKIRIVNQC
ASLVWNLIPF LVSFTSFATF ALTQNIPLTS EIVFPALAIL NLLSSPLLQL PATITNIIEG
SVAIDRIKTF LTSSEVDESL LNHMPHPAKE NEVAISIENT SFLWSQGTYS DDTTDTRRFA
LKDINFSVRR GELSCIVGKV GSGKSSLLYS LLGQLIMVNG EGNGVPAVNI KGTIAYCAQS
PWIMNASVKE NILFGCRYEK DFYERTLDAC QLLPDLEVLP DGDDTQVGEK GVSLSGGQKA
RLALARAVYA RADIYLFDDI LSAVDSHVGK KIIQKVLSKS EGLLAHSTII LCTNSISVLS
YSDNVTLIEK GHIIETTSYE DIKLGNHPKL FDLISEFGNS DISKTPSVSE SNFNVAASIE
TLRWDPLKKL LPNLRSGQIT EESQKGKVKW SVYHAYARAC SIPGVAAWFG LLILASFVSV
GGNYWLKYWT EKNSQSGKNV SVWKFITVYA IFGFGASTMS VLRSSVMMLW LAINASREIH
DMMATRILRA PMDFFERTPV GRIMNRFTND MNRVDDSIPG VFQGFVVQSI SALITFGVIG
FVMPFYIIVI AVLSLGYVYY DVYYIALSRE LKRLVSISRS PIYGHLGESL NGLDTIRAYN
QGVRFDFINN ANVDCNLQTQ YMLRSINRWL MFRLQLIGSL GVLGAGLLAL MTIFTASPLT
SSMAGFIMTY ALEVTVSLKM MVRQSAEVET SIVAVERCLE YSTLPVEEDI ENKTLIVPPI
QWPNRGSIEF VNYSTRYRAN LDLVLRNISM IINSGEKVGI VGRTGAGKSS LALSIFRIIE
AVEGNINIDD IDTGSISLYD LRHRLSIIPQ DSQLLEGTVR QNLDPFNYYT DEEVWKALKL
AHLKDHIVNL KETEGETPES KLDCKVYEGG SNFSSGQRQL MSLARVLLKM TNSKVLVLDE
ATAAVDVQTD KIIQETIRAE FKDKTIITIA HRLETVMDCD RIVSLDKGEL KEYDSPQNLL
KNEKSIFHSL CKQGGYI
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