| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_90641 |
|---|
| Symbol | CHD1 |
|---|
| ID | 4840385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | + |
|---|
| Start bp | 772013 |
|---|
| End bp | 776677 |
|---|
| Gene Length | 4665 bp |
|---|
| Protein Length | 1414 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640391700 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | XP_001385507 |
|---|
| Protein GI | 150866039 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.104973 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TCTGTCTTTC CACCACCAAG TTCTTATAGC TTTGTGATAT CTAGACTTGG AGAGGCTAGC
CCGTACTGAG TGCATCTGAA TAACACCCAA TTTTCGGTTG TGATAGCTTG TGGGTATTCT
CATTTTTCGT ATCTCCAGAT CCTTATACTT TCCATATCAG CTAGCATAAA CATTGTTGAA
CAGGCAGGGT ATTTTTCTGC AAAATTCATA ATATTTTCAA TATTTATACT CTATTCAGTG
TAGCGACTGG AATTCGCCAT TGGACAGAAG TTCAACTGTT ATAATTGAGA TTTTGTTGGT
ATCTGATCAT TAGTTTATAA GCTATCTTGA TTTACAATCC CACAGTCTTC ACTTACTAGC
TAATAATATC ATGGTCAAAC CGGTATTACA AGAGGCAACC CTCTTTCCGG AACTCTACGG
ACTCAGACGG TCCCACAGAG AAAGACGTGC TGCCATCGTC GAAAGTGAAA GTGAAGAAGA
ACCTATTCCA AAGAGAAGGA AGAAGAAAGC TCAACGAACT GAAGATTACG GTGATGAAAA
CGAAGAAGAT GAAGAAGACG ACGCGGAAGA CTCTGAGGAC GAAGATTTTT ACGACAAGCC
TCTTGCGAAG AAGAAGAAGA AGACAATTAT ACAGAAGAAG AAGAAGAAAT CATCTGTGAA
ACTGGAACCT TCGGTTCCTG CTGAGATCAG ATTCTCGTCG AGAAATAACA AACAGGTTAA
CTATGCCGTT GATTATGATG ACGACGACGA CTTGCTTGAA AGTGAACCAG AACTTGACGA
AAACGACGAA GACGTAAATG GAGATTACTA CTACTATCAA CAAGCCAATG AAGATGAAAA
CGAAAGAGGT ATCGATCTCG TCATGGATCA CAAACTAAAC GAAGAAAATC CGGAAAAGAC
TGGTGACCCG AAGCTAGACT ACTTGTTCAG AATTAAGTGG ACAGACCAAT CGCATTTGCA
TAATACTTGG GAGCAGTGGA ATGACTTGAA GGAGTACAAA GGTATCAGAA AAGTCGAAAA
CTACATCAAG CAATTCATAA TATATGATCA AGAGATCAGA AACGATCCTT TGACGACTAG
GGAAGACATA GAAGCCATGG ACATTGACCG CGAAAGAAAA CGCGATGAAC AAGAAGAATA
CACTCGTGTT GAAAGAATCG TTGACTCCGA AAGAATTGAA ACCGAAAATG GCGAAACTAA
GTTACAATAC TATTGTAAGT GGAGAAGACT CTACTATGAC GAATGTTCTT GGGAAGATGC
TGAAGAAATT GCTAAGATTG CTCCCGATCA AGTAGCCAAG TATCAGCAAA GGTTGAAGTC
TAAGATATTG CCAAACTTGT CAGCTAATTA CCCATTGTCA CAAAGACCTA GATTTGAAAA
GTTGGTTAAA CAGCCTGTTT TTATCAAGAA TGGAGAGTTG AGAGATTTCC AGTTGACCGG
TTTGAACTGG ATGGCTTTCT TGTGGTCTAG AAACGAAAAC GGTATTCTTG CTGATGAAAT
GGGGTTGGGT AAGACTGTGC AAACTGTTTC ATTTCTCTCT TGGTTGATTT ATTCTAGAAG
GCAGAATGGC CCTCATATTG TTGTTGTGCC ATTGTCAACA ATTCCAGCTT GGCAAGAGAC
CTTTGAGAAG TGGTCTCCTG ATGTAAACTG TGTTTATTAC TTAGGTAATA CTCAGGCACG
AAAGACCATC AGAGACTACG AATTCTACGG ATCCAACAAT AAGCCTAAAT TCAACATATT
GTTAACTACA TATGAATACA TTTTGAAGGA CCGCAACGAA TTGGGTGCTT TCAAATGGCA
ATTCTTGGCT GTTGATGAAG CTCATAGATT GAAGAATGCT GACTCCTCGT TATATGAATC
GTTGAAGAGT TTTAAGGTTG CCAACAGATT GTTGATTACT GGGACACCTT TGCAAAACAA
TATTAAGGAA TTGGCCGCTT TGGTTAACTT CTTGATGCCT GGCAAATTCG ATATTGAGCA
AGAAATCGAT TTTGAAACTC CTGATGAAGA GCAGGAATTG TACATTAAAG ACTTACAGAA
AAAGATCCAG CCTTTCATAT TGAGAAGATT GAAAAAGGAC GTGGAGAAAT CCCTTCCTTC
CAAGACAGAA AGAATCTTGA GAGTAGAATT ATCAGATATC CAGACTGAGT ACTACAAGAA
CATTATCACT AAAAACTATT CTGCTTTGAA TGCTGGAAAT AAGGGCGCTC AGATCTCGTT
GTTGAACGTG ATGAGTGAGT TGAAGAAGGC GTCTAACCAT CCTTACCTTT TCGATGGTGC
TGAGAACAGA GTTTTAGCCA AGGTTGGTTC TGCTACTAGG GATAACATCT TGAGAGGTAT
GATTATGTCT TCTGGTAAGA TGGTTTTGCT TGAACAATTA TTAACCAGAT TGAAAAAGGA
AGGTCACAGA GTCTTAATCT TCTCTCAAAT GGTCAGAATT TTGGATATTC TTGGCGATTA
TTTATCGATC AAGGGTTACC AGTTCCAAAG ATTGGATGGT GGGATACCGT CTGCTCAAAG
AAGAATCTCT ATTGACCATT TCAACGCTCC AGAATCAAAG GATTTCATCT TTTTGTTGTC
CACTAGAGCT GGTGGGTTAG GAATTAATTT AATGACCGCT GACACTGTTA TCATATTTGA
CTCTGATTGG AACCCTCAAG CTGATTTGCA GGCAATGGCC AGAGCTCATA GAATTGGTCA
GAAGAATCAT GTGTCGGTTT ACAGATTCGT TAGTAAAGAT ACTGTTGAGG AGCAGATCTT
GGAAAGGGCT AGGAAAAAGA TGATTTTGGA GTACGCCATT ATTTCGTTGG GAATCACAGA
TCCCAACTCG AAGAAGAGCA AGACCGAACC ATCAACAGGT GAATTGAGTC AAATCTTGAA
GTTTGGTGCT GGCAATATGT TCAAAGAAAA CGATAACCAA AAGAAGTTGG AAGATTTGAA
CTTGGATGAT GTATTAAATC ATGCTGAAGA TCATGTCACT ACTCCTGACC TTGGAGAGTC
CAACTTGGGT TCTGAAGAAT TTTTAAAACA GTTCGAAGTT ACAGATTACA AGGCCGATGT
TGAATGGGAC GATATCATCC CTCAAGAAGA ATTGGCCAAG TTGAAGGACG AGGAGAAAAA
GAAGGCGGAT GAGATCTACT TGGAAGAACA AATTGCTATG TACTCGAGAA GAAAAGCTGC
CGTTCGTAAA TTTGAAAATG GATCGGTTGC TCCAAGTGAT GACGAAGATG AAGATTCTTC
TCTGGGTAGA CAACCAAGAC TGAAGCATGC CGGCGACCAT CAACTTTCTG AAAAGGAAAT
TAGAGGTATA TACAGATCAA TCTTGAGACT TGGTGATTTG ACTGGAAGGT GGGAGCAATT
GGTTGAAGAA GGAAGTGTCA CAAACAAGAA TCCCGTTTTG GTCAAACATG CCTACAATGA
GATTATCAAC ACTTCCAAAC AATTAGTAAA GGAAGAAGAA ATCAGAAGAA CTAAAGCCTT
GGCCGATTTG GAAAGAAAGG CTATTGAGCA AAGAGAAAAG GGAGCTGTAG AAAATCCAAC
GGCCTTGTGG ATTGCCAAGA AGAAGGAAAA GAAGGCCGTC TTATTCGAAT ACCAGGGGGT
CAAGAATATT AATGCTGAGT TGGTATTGAA TAGACCTGTG GACATGAAGA TGCTTGACAG
TATGATTCCT AAGGAAAACC CTACTTCATT TGAATTGCCC AGACCTCCTA AGCTGGTGTC
AGCCTGGTCT TGCGATTGGT CTGAAAAGGA CGATGCCATG TTGTTGGTTG GTGTTTTCAA
ATTCGGATAT GGATCTTGGG TTCAGATTCG TGACGACACT GTTTTGGGAT TGCAGACAAA
GCTCTTCTTA GAAGGCTCTA CGAATCCTAA GGAAGCAAAT ACAGTGAGTA CTGCTCCTGC
TGGTGAAGCT GGCTCTGGTG CTCCAGTTGA AGAAAAGGCA GTTAAAAAGG TGCCAGGCTC
TGTGCATTTG GGTAGAAGAG TAGATTACTT GTTCTCGTTA CTCAGAGGTG ACGATGACCG
TGCAAATGGA GGCTCCACTC CTTCTGGTGT TACTATTAAG AAGAAAGTGA GAAGACCAAA
GACGGAAACG CCGGTTCCAG CAGGTAAAGC TAAAGCCGCA GCTAGGTCAC AATCTCCCGA
AACTAACCTC AAGAAGTCTA AGGTGAGAAG CATTGCTCCA AAGGCGTCCC CATCTAGTCC
CGCTGGTAAC TCTCCAAAGG TAGATTCTGG AGCTCACACA CACTCTAGTC AGCACCAGCC
ACATCACAAC AACAATTCCA AGGATGATGA TAAAGATCTT GAATACGATA GCATGGATGA
AGGGTACTGC AAGGACGTAT TGAAGCCCGT TGCAAAGTCG TTGATGAGAC TCCACAAAGG
AAATCAAGGA TTTGAAAAAC ACGAATGGGC CAACATCTTG AAAACGGAAT TGCTCACCGT
GGGCGACTTT ATTGGCACAG TTGTCAAGCC GTTGGACGGT AAACCAGAAG GAAATAAGTT
GCAGAAGCAT TTATGGTCGT ATTCTAGACT CTACTGGCCA GCTAAAGTTC CTTCGAAAAA
GATCTTCGAC ATGTACACTA GACTAAAGAC CAAATCTGGC CAAAACACTA AGTAATTACG
TTTACAGATG TATGTATATA CAATACAAGA GAATTTGCTC TATAG
|
|---|
| Protein sequence | MVKPVLQEAT LFPELYGLRR SHRERRAAIV ESESEEEPIP KRRKKKAQRT EDYGDENEED
EEDDAEDSED EDFYDKPLAK KKKKTIIQKK KKKSSVKSEP SVPAEIRFSS RNNKQVNYAV
DYDDDDDLLE SEPELDENDE DVNGDYYYYQ QANEDENERG IDLVMDHKLN EENPEKTGDP
KLDYLFRIKW TDQSHLHNTW EQWNDLKEYK GIRKVENYIK QFIIYDQEIR NDPLTTREDI
EAMDIDRERK RDEQEEYTRV ERIVDSERIE TENGETKLQY YCKWRRLYYD ECSWEDAEEI
AKIAPDQVAK YQQRLKSKIL PNLSANYPLS QRPRFEKLVK QPVFIKNGEL RDFQLTGLNW
MAFLWSRNEN GILADEMGLG KTVQTVSFLS WLIYSRRQNG PHIVVVPLST IPAWQETFEK
WSPDVNCVYY LGNTQARKTI RDYEFYGSNN KPKFNILLTT YEYILKDRNE LGAFKWQFLA
VDEAHRLKNA DSSLYESLKS FKVANRLLIT GTPLQNNIKE LAALVNFLMP GKFDIEQEID
FETPDEEQEL YIKDLQKKIQ PFILRRLKKD VEKSLPSKTE RILRVELSDI QTEYYKNIIT
KNYSALNAGN KGAQISLLNV MSELKKASNH PYLFDGAENR VLAKVGSATR DNILRGMIMS
SGKMVLLEQL LTRLKKEGHR VLIFSQMVRI LDILGDYLSI KGYQFQRLDG GIPSAQRRIS
IDHFNAPESK DFIFLLSTRA GGLGINLMTA DTVIIFDSDW NPQADLQAMA RAHRIGQKNH
VSVYRFVSKD TVEEQILERA RKKMILEYAI ISLGITDPNS KKSKTEPSTG ELSQILKFGA
GNMFKENDNQ KKLEDLNLDD VLNHAEDHVT TPDLGESNLG SEEFLKQFEV TDYKADVEWD
DIIPQEELAK LKDEEKKKAD EIYLEEQIAM YSRRKAAVRK FENGSVAPSD DEDEDSSSGR
QPRSKHAGDH QLSEKEIRGI YRSILRLGDL TGRWEQLVEE GSVTNKNPVL VKHAYNEIIN
TSKQLVKEEE IRRTKALADL ERKAIEQREK GAVENPTALW IAKKKEKKAV LFEYQGVKNI
NAELVLNRPV DMKMLDSMIP KENPTSFELP RPPKSVSAWS CDWSEKDDAM LLVGVFKFGY
GSWVQIRDDT VLGLQTKLFL EGSTNPKEAN TVSTAPAGEA GSGAPVEEKA VKKVPGSVHL
GRRVDYLFSL LRGDDDRANG GSTPSGVTIK KKVRRPKTET PVPAGKAKAA ARSQSPETNL
KKSKVRSIAP KASPSSPAGN SPKVDSGAHT HSSQHQPHHN NNSKDDDKDL EYDSMDEGYC
KDVLKPVAKS LMRLHKGNQG FEKHEWANIL KTELLTVGDF IGTVVKPLDG KPEGNKLQKH
LWSYSRLYWP AKVPSKKIFD MYTRLKTKSG QNTK
|
|---|
| |