Gene PICST_90212 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_90212 
Symbol 
ID4839954 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp866549 
End bp867359 
Gene Length811 bp 
Protein Length232 aa 
Translation table12 
GC content39% 
IMG OID640391269 
Productpredicted protein 
Protein accessionXP_001385864 
Protein GI126138682 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0244] Ribosomal protein L10 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.134219 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
AAAATGCCTA GATCCAAACG TTCTAAGCTC GTTACTTTGG CCCAAACTGA TAAAAAGGGA 
AAGGAAAATA AAACCCGTAT CTTTGACGAT GTTAGATCTG CGTTGGATGA ATTTCAATTT
GTCTGGGTCT TGCAACTAGA TGATGTTCGT ACCCCAGTCT TGCAAGATAT TAGATCTGAC
TGGTCAGGAT CGAAATTAAT CTTGGGTAAG AGAAGAGTTT TGGAAAAGGC CTTGGGTGAT
ACTCCAGAAG AAGAATACAA GGACAACTTG CACAAGTTAT CGAAGACTTG TACTGGTCTT
CCAGGCCTAC TCTTCACCAA CGAAACTCCG GAGACTGTCC AAGCTTACTT CACTGCTTAC
AGCAAAGCAG ACTATTCGAG AGCCAAATCA AAGGCACCAA TTGACTTCAC AATTCCAGAA
GGTATTGTGT ATTCCAGAGG TGGTCAAGTC CCAATCGAAG AAGATGTCCC AATGTCCCAT
TCTTTAGAGG AAACTTTGAG AAATAAATTG AAAGTTCCAA CTAAGATCAA GGCTGGTAAG
ATAACTATGA ACGAACCATA TGTTGTTTGC CATAAGGGAG AAACTTTGGA CGTTAGACAA
GCATTGATAT TGAAGCAATT CGGGGTTGCT GCTTCTGAAT TTAAGGTCAA TGTCGTTGCA
TACTACAACA ATGAGAACTC CGAAGTTACC AAGTTGAACT AAACAAAGCC TTCTATGGTT
CATCTCTGTC GAGATCGAAA TTTTTTTGCA TCATTTTGTT TTCCGAAAAA CGTGTATAAT
ACCAGTTCTC TAGAATATAT AATATTGTAT T
 
Protein sequence
MPRSKRSKLV TLAQTDKKGK ENKTRIFDDV RSALDEFQFV WVLQLDDVRT PVLQDIRSDW 
SGSKLILGKR RVLEKALGDT PEEEYKDNLH KLSKTCTGLP GLLFTNETPE TVQAYFTAYS
KADYSRAKSK APIDFTIPEG IVYSRGGQVP IEEDVPMSHS LEETLRNKLK VPTKIKAGKI
TMNEPYVVCH KGETLDVRQA LILKQFGVAA SEFKVNVVAY YNNENSEVTK LN