| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_90189 |
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| Symbol | SED5 |
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| ID | 4839987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 406345 |
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| End bp | 407403 |
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| Gene Length | 1059 bp |
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| Protein Length | 332 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640391302 |
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| Product | SNARE protein SED5/Syntaxin 5 |
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| Protein accession | XP_001385431 |
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| Protein GI | 150865986 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5325] t-SNARE complex subunit, syntaxin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0309311 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0779886 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TCAGAATTAC AACGATTTTT CTTCTCGTAT AGACCCGATA TAGACACACA AGGAAGAGAT
ATGTCGTTGT CGATCCAGAA CAGAACGTTT GAATTCCAGC AATGTGTTAC TTCCTATGAT
AAAATAAATA GAAAACAGCA CAACTATATC AAGCCCAATA ACCAAGAATG GCCACCCAAA
AAGCTGAAAT TCAGCCAGCA GGCTTCAATC ATTGCTAAAG ATATTGTACA TGTGACAGAG
TTGTTGAGCA AATTGGCACT TTTGGCTAAG AGAAAGCCTC TCTTTGACGA TAAACCAGTA
GAGATAGGTG AGCTCACATA TGTTATCAAA CAAGAGATCT TCAAGATTGA ACAGAACATG
CAAAATTTAC AACGGTTTGT GAAAGGAGAT GCTAGTGTAG TTGTAGACTC GCAAACGACC
CAGTTCTCCA AGAATGTGTT GAACTTGTTG AACTCTAAAA TGAAGAATGT ATCTGGAGAA
TTCAAAAATG TTTTGGAAAT CAGACAGAAG AACGAAATTA TGAACAAAAA CAGAACCGAG
AACTTTTTGT CTGCGGCCAG TAATCACCGT TCGAGCAACA ATCCATCGCC GCTAGTGGAG
TCAGGCGACC ATCTCAGCAA TCTAGGCGAA AACCCATATC TCATGAACAC GCAACGAGCT
GAATCGCCCC TACCATATGA CCCAGATGCC GATCCAGATG TCTCGTATCC ATATTCCAAC
GGCGAATACT TGTCAATACC CAACCAGACA CAACAGATGC TACTTATGGA AGAACAGGGT
GGTCAGTATT TGCAACAGAG AAACAGAGCT GTCGAAACGA TAGAGTCTAC CATCAACGAG
GTCGGAAATT TGTTCCAGCA GTTGGCTACT ATGGTAAGTG AACAGGGTGA ACAGATACAG
AGAATAGACG AAAATGTGGA GGACATCAGC TTGAACATCC TGGGAGCACA GAGAGAGTTG
TTGAAGTACT ACGCACATAT AACCAGCAAC AGATGGTTGT TCTTGAAGAT CTTTGGTGTA
TTGATAGTGT TCTTCTTCCT CTGGGTGTTG GTGAGCTGA
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| Protein sequence | MSLSIQNRTF EFQQCVTSYD KINRKQHNYI KPNNQEWPPK KSKFSQQASI IAKDIVHVTE
LLSKLALLAK RKPLFDDKPV EIGELTYVIK QEIFKIEQNM QNLQRFVKGD ASVVVDSQTT
QFSKNVLNLL NSKMKNVSGE FKNVLEIRQK NEIMNKNRTE NFLSAASNHR SSNNPSPLVE
SGDHLSNLGE NPYLMNTQRA ESPLPYDPDA DPDVSYPYSN GEYLSIPNQT QQMLLMEEQG
GQYLQQRNRA VETIESTINE VGNLFQQLAT MVSEQGEQIQ RIDENVEDIS LNISGAQREL
LKYYAHITSN RWLFLKIFGV LIVFFFLWVL VS
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