Gene PICST_65964 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_65964 
SymbolSPS22 
ID4839820 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp1165565 
End bp1166413 
Gene Length849 bp 
Protein Length257 aa 
Translation table12 
GC content45% 
IMG OID640391135 
Productshort-chain dehydrogenase/reductase (SDR) family protein 
Protein accessionXP_001385577 
Protein GI126138108 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.647739 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATTTATTCAT CAATCGACCT CATCAATCGA TCTCATCAAT TAACCGATAC TCAATTCCCC 
TCAACACAAT TCAAAATGGC TGGTAACTTC AAATCAGAAA AGGACATCTC TGGCAAGGTC
GCTGTCATAA CTGGTGGAAC GACCAACTTG GGTGGTGAAA CCGCTAAGGA ATTGGCTTCG
CTTGGTGTCA ACTTGTTCTT GCACTACCGT TCGTCTTCTG AAGTAGCCAA GAAGTTCCAG
GAAGAACTCA AGGCCAAGTA CCCAAAGCTT CAAATTGAAA TATACCAGGC CCCATTAAAG
GCCGCTGCTG ATTTGACTAA ATTGTTTGAA GCTGCCAAAA AGGCATTCCC ACAAGGTATT
GACATTGCCA TTAACAACAT TGGTAAGGTT GTCAAGAAGC CTCTTGTTGA AGTCACAGAA
GAAGAATTCG ACGAATTGGA CCTTGTCAAC CACAAGGTAG CCTTTTTCTT CTTGAAGGAA
GCTGCCCTTA ACTTGAACAA CAATGGTAGA ATTGTCACTA TTGTCACATC CTTATTGGCT
GCCTACACTC CATTCTACTC ACCTTACCAA GGTACCAAGG CCCCAGTGGA ATTCTACACC
AAGGCATTGT CTAAGGAATT GGGTGAGAAG GGCATAACCG TCAACAACGT TGCTCCTGGT
CCAATGGACA CGTCTTTCTT GCACACATCT GAAACGCCTG AAGCTGTCCA ATATTTGGCC
TCTGTAGGTC TTAACGGTAG ATTAACTGAA CTTCCTGACA TCGTTCCAAT TGTCAGATTC
TTGGTTAGCG AGGGTGCCTG GATCACAGGT CAAACCATTT TCGCTTCCGG CGGTTTCACT
GCTCGTTAA
 
Protein sequence
MAGNFKSEKD ISGKVAVITG GTTNLGGETA KELASLGVNL FLHYRSSSEV AKKFQEELKA 
KYPKLQIEIY QAPLKAAADL TKLFEAAKKA FPQGIDIAIN NIGKVVKKPL VEVTEEEFDE
LDLVNHKVAF FFLKEAALNL NNNGRIVTIV TSLLAAYTPF YSPYQGTKAP VEFYTKALSK
ELGEKGITVN NVAPGPMDTS FLHTSETPEA VQYLASVGLN GRLTELPDIV PIVRFLVSEG
AWITGQTIFA SGGFTAR