| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_48738 |
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| Symbol | |
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| ID | 4840416 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 1325101 |
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| End bp | 1326882 |
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| Gene Length | 1782 bp |
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| Protein Length | 581 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640391731 |
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| Product | predicted protein |
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| Protein accession | XP_001385607 |
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| Protein GI | 150866117 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG5256] Translation elongation factor EF-1alpha (GTPase) |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.655952 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACGG ATCATCGTGT AAACGATAGT GAGCAGTCCT TACTTTCGTT GGAACTCGCT
GTGGATAGCA GTAGACTTCT CTTTAAGCCA AGAAGTGACC TCATGGAGTT CCTCTTGAAT
GGAAATAGCA CCAAGAGAAG ATACTCTACG ACCGTTGATG AAAATAGAAA AAAAAGAATA
CGACGTGACG ACCTTTTATT TCATACTCTT ACTAACATAA GCCTTGATTC AGAGAAAATA
GCGAAGGCTA AACAGAATTT TGCTGACCCA TCGCCAGACG ACAAGGTCTT GGAAGCTCAG
AAAGAGGCCT TTGAACAGGG AATGGGTAAC TTAAAGATCT CTCAAGCCGG TAGTAGTTCA
AGTGTTTCAA AAGCTACTAC ACCAGAGACT TCTAAAACGG TCAAAACCAC TAAGCCAGCT
AAGAAGATCG ATATTCTAGA GGAATTGTCT ACCAACAGCA CCTATGCTAA ACCGCACAAG
TCTTTTGTAG TCATTGGACA TGTGGATGCT GGGAAGTCTA CTTTGATGGG TAGAATCCTC
TTTGACTATG GAATTGTAGA TGCTCGAACT GTGAACCGTT TGGTCAAGGA AGCTGAAAAT
GCAGGTAAGG GATCATTTGC GCTTGCTTGG ATTATGGACC AGACAGCTGA AGAACGTTCG
CATGGTGTAA CTGTAGACAT TTGCGCAACG GATTTTGAAA CTCCCACTAC AAGATTCACA
GCTATAGATG CACCTGGCCA CAAGGACTTT GTTCCACAAA TGATTGGAGG AGTTTCCCAG
GCTGATTTGG CACTTCTTGT AGTAGATTCA ATTACTGGTG AGTTTGAAGC TGGTTTTGCA
ATGGATGGAC AAACCAAGGA ACACACCATT TTAGCCAAGA ACTTGGGTAT AGAGCGGATA
TGTGTGGCTG TAAATAAGTT GGATAAAGAA GATTGGAATG AGGAAAGGTT CGAACTGATC
AAGACCCAGT TAACAGAATA TTTGACTAGT GACGAAGTTC AATTTGCTGA AGAGCAGATC
GACTTTGTGC CGATTTCCGG TTTGAGTGGT AACAATGTGG TCAAGCGTGA TACCTCCATT
GCCGCGTTCA ATTGGTACAA GGGCCCTACC TTGGGCCATT ATCTTGAAAA CGTGAAGTTG
TCTTCTACAG TAGACACAGA CTCTATTTCA AAGTTACTCT CTGAAGATTT CTTTGTTTCT
GTCCATGATT CTCATAAGGA TAAGGGTGAA TACAAGATCA GTGGCAAAAT CAGTAGTGGT
GTTATTCAAG TTGGAGAAAC TGTGATTGCT GCTCCCAGTG AAGAAGTATT CAAGGTTCAT
TCTTTACGTG TAGCCAAGAA GAAGGTAGAC TTTGCTATTC GTGGAGAATT GGTAGAGATG
TCGTTCAAGG CTAGCCAGGT TTCGAATGAA AGTGCCGATA TCTTCAGGAT CGGCGACTTG
GTCTCTAAGG TTGGCTCTCC AGCCAAGACA GTCAAGAAGT TTACCGTGTC ATTGCATTTG
TTCAACATGG ACAAGCCATT GTTGGTCGGT ATGCCCTTCG TTTTGTTTAG GAATAACTGC
CAGGTACCTG CCAGAGTATC CAAACTTATT GAAATCACCA GTGGCAAGAA GAAAAAGAAG
TTGCTCCATC TTGTATCAAA GCAAACAGCT ATCGTGGAGA TTGAAGTACA AGAGGGAAGC
TCGCTTCCTT TGACAAAGTA TTCGGATAAT AAGATATTGG GCAGAATCGT CATCAGAAGA
GAGGGAGTTA CAATTGGAGC AGGAACAGTA GTGGATTTCT AA
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| Protein sequence | MATDHRVNDS EQSLLSLELA VDSSRLLFKP RSDLMEFLLN GNSTKRRYST TVDENRKKRI
RRDDLLFHTL TNISLDSEKI AKAKQNFADP SPDDKVLEAQ KEAFEQGMGN LKISQAETSK
TVKTTKPAKK IDILEELSTN STYAKPHKSF VVIGHVDAGK STLMGRILFD YGIVDARTVN
RLVKEAENAG KGSFALAWIM DQTAEERSHG VTVDICATDF ETPTTRFTAI DAPGHKDFVP
QMIGGVSQAD LALLVVDSIT GEFEAGFAMD GQTKEHTILA KNLGIERICV AVNKLDKEDW
NEERFESIKT QLTEYLTSDE VQFAEEQIDF VPISGLSGNN VVKRDTSIAA FNWYKGPTLG
HYLENVKLSS TVDTDSISKL LSEDFFVSVH DSHKDKGEYK ISGKISSGVI QVGETVIAAP
SEEVFKVHSL RVAKKKVDFA IRGELVEMSF KASQVSNESA DIFRIGDLVS KVGSPAKTVK
KFTVSLHLFN MDKPLLVGMP FVLFRNNCQV PARVSKLIEI TSGKKKKKLL HLVSKQTAIV
EIEVQEGSSL PLTKYSDNKI LGRIVIRREG VTIGAGTVVD F
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