Gene PICST_48297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_48297 
Symbol 
ID4840350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp745882 
End bp746799 
Gene Length918 bp 
Protein Length305 aa 
Translation table12 
GC content41% 
IMG OID640391665 
Producthypothetical protein 
Protein accessionXP_001385501 
Protein GI150866034 
COG category[S] Function unknown 
COG ID[COG2135] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.117145 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATCCGTGTAC AATTTGATGT TTCCAGAGTT CACAATTGGT ATCCTTCCTA CAATATTGCA 
CCTACCAATG CTGCGTTAAT GATCTATATG GTAAACACAA GTGATGCTGA CTACAGATAT
GTGTTGGAAC CGCTGAAGTT TGGCATGATA CCGTATTGGG CGAAGCCGAC TGACCCCGAG
CCGACCAAAA ATGGCGTTGC CTATTCCAGG GAGATCCAGA AACATCAATC TAAATACTTC
AACTGTAGGA AAGAGACATT GGCACAGAGC AAGAGTGTCT GGAGTAGCAG TAGAAAGAAT
AAAAGATGCG TAGTACCAAT TCAAGGCTAT TTTGAATGGT TGAAATCGAA AACAGACAAG
GTCCCACATT ACGTCCACTC GAAATCGTCT TCTATTATAT ACCTAGCTGG ACTCTACTCC
CACAATACGA ACTACACAGA AAACACGAAC GTCAATGGTG AATACCTTTC TTCGTTTGCA
ATAGTAACCG GTGCTGCTAC GAAAACAGAC GAATATGATA TCTCGTGGTT GCATAGTCGA
AAACCCATAA TGCTAGTTCC TGGTTCTCAA GAATGGTTCG ACTGGCTCGA TCCTAATAAG
ACTTGGAACG AGAACTTACT AGACACAAGT TTGAATGTTG AACATAACAA GGCATATAAA
GATATCGAGG GCTATCCAGT GTCGAAAGAA GTAGGTAACC CATCCAACAA GAGCGATAAC
ATTATCAAAA GAGAGGAGAA GAAACCTCAA AAATCTATTA CTCTGTTCTT TAGTCCTACA
AAACGAATCA AAAAAGAAGA GACACAGCTG GAAGAAAATT CCCCTGCGAA AAAGAAAATC
AAAACAGAAT CTAATGATAC TAGTAGAACT AAGGTCAAGA CCGATTCTAG TGAGACTATA
GTCAAGGAAG AGCAGTAG
 
Protein sequence
IRVQFDVSRV HNWYPSYNIA PTNAALMIYM VNTSDADYRY VLEPSKFGMI PYWAKPTDPE 
PTKNGVAYSR EIQKHQSKYF NCRKETLAQS KSVWSSSRKN KRCVVPIQGY FEWLKSKTDK
VPHYVHSKSS SIIYLAGLYS HNTNYTENTN VNGEYLSSFA IVTGAATKTD EYDISWLHSR
KPIMLVPGSQ EWFDWLDPNK TWNENLLDTS LNVEHNKAYK DIEGYPVSKE VGNPSNKSDN
IIKREEKKPQ KSITSFFSPT KRIKKEETQS EENSPAKKKI KTESNDTSRT KVKTDSSETI
VKEEQ