| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32571 |
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| Symbol | CDR6 |
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| ID | 4840102 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | - |
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| Start bp | 125939 |
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| End bp | 129805 |
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| Gene Length | 3867 bp |
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| Protein Length | 1253 aa |
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| Translation table | 12 |
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| GC content | 39% |
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| IMG OID | 640391417 |
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| Product | ABC transporter family protein |
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| Protein accession | XP_001385718 |
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| Protein GI | 150866206 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.318533 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCAG AAGTATTGGC CATAGAGCCT CATCACAGAG TTAGCATTCT GGTTAGAAAC
CTAGTGGTAT CAGTAAAGGA AAAAAAGAAA AAGACGAGAC AGAACAGTAA TGAAAAGGAG
TTGGAGTCGC TGGCTGCTAA CCCCAAGATC CTTGACAATG TGTCGTTCGA CATTCAGGCC
GGTGAAATGA TGGCTATAGT TGGAGGTTCA GGCTCTGGCA AAACAACTTT GCTTAATACC
CTTTCTACCA GATTAAATGT GGAGAACCAC AGCTTGGACT TCTCAGGCTA TGTAGAGTTT
TCAACTCCCA ATGGCGACAA GAGAATCAAG AACTCGTATC TTCAACAGTC TGATGTGTTT
TTGCCAGGTC TTACTGCCTT TGAAACATTG AGGTTCCAGG CAGACTTGAG ATTACCACCG
CTGGTTCTGC AAAATGAAAA GATTGCTCTC ATTGAATCGT TGCTAGATAC TTTAGAAATC
TCCCACTTAA GAAATACGAG AGTTGTCTCC TTCACCCAAA GAATCAACCT ATCCGGTGGT
GAACAGAGAA GATTGTCGTT GGCTGTTCAA TTGCTCAATA AGCCTTCCGT TCTTTTCCTT
GATGAACCAA CTACCGGCTT GGATGCTAGT AATGCCTTGA AATTGGTTCA AGTTTTGAAA
AAGTTATCGT CTCCGGAATT TGGAGTCACG GTGGTCATGT CGATTCATCA GCCCCGTTTG
GAAATCACAA AGCTATTTGA TAAGATTTGC TTGATAACCA GTGGAGGAAG AATGGTATAC
TATGGAGACC TTGCAGAATC TGCTTCCTAC TTCAACAGAA TCAGTTTCCT TAGCAAGAAC
ACAATTAGCA GCCACAAATC GTCGAATTTC ATCGACTATA TCATGGATAT TGCAGTTAAG
GACTCTACTA CAAAGGCAAA TGAAGAGCTT ACATCCAAAA GAATCGATCG CTTGGTTGAA
TATTGGAATG AATATAGTCC CTTCAATCTG ACAGATATTT TTGATGGTGA TGGGAGCTTA
AAAGATCTAA TGAAGGTATT CGAAAGACCA AAGCAAGATA GAATCTCTTT CTTCAAAGAA
GTCTACATTT TGACCAGAAG AACATTTCTT TTAACGTATC GTGATAAGCT CTCTCTCTTG
GCTCTAGACG GTGGATCTCT TGTTACCGCA GTTACCTTAG GTTGGATGTT CTATAGACCT
GTCCATGACC TTTCAGGTAT TAGATCGCTT ATTTCGTCCT TATACATTAT GATGGAAATT
ATTGGGTTTG CCCCTGTATT CATTGAATTG GAGAGATTAT GGGGACCCGA TGGTAGGAAC
TTCTTCAGAG AATACAAAGA AAACTATTCA AGTATTCCTG GTTTTGTGAT TTCTAGAAGA
TTGGGCAAAG TCCTCTTAGA GGATTTCCCA TTAGCTGCAA TCTTTGCTAT CATTACCTAT
TTTATGTGGG GCTTGAGAGA AGGTGTAGGT CATTTTTTCG TCTATTTTGC TTTGACGGTA
TTGACTTCAT TTATTGGTAT GTCGACCGGT ATGGCTTTCT TTGCGATTGG TTCCGATTTT
GCCATATCGA GTATGTATCT CAATGTCTTC TACCAACTTC AGAATAATGC CTCAGGTTAC
TTTGTTAATG CTGCGACCAT GCCGGTGTAT GTCAAATGGA CCAAATATAT TGCCTACTTT
TGGTACACCT TTGGCGCATT GAACGCAAAT CAACTAACAG ATTGGGAAGG TGTTTGCACC
AGTAATGACC AAGCTGAATG TGTTGAATAC AGTGGTAATT ATCAATTGCT GGTTTTAGGA
TATCCTCGGC ATTGGGTGGC TGAACCTATT GGCATTTTGA TTGCCTGGTT GGCAGGCTTT
TACGTTATAA CAATCATCGG TCTTTATTTC AAGAACTATG AAATGGAAAT GTCTAAGACA
AGGACAAATA CAATTGGCGA AGAAGAAACT GAAGAGGATG AAGAGGAAGA TGATGAAGTA
TCTAAAAAGT CTTTTGCAGC AGAGATGGAC AGTCCAGACG ATCTCTTTAG AACTCCGGGC
TTATTTGATG TTCCAGCAAC CCAGTCTGAT CACACCTCCG AGAACATTAG TATCTTCCTC
GATCAAATTA AACTTAATGT CATAACTAGT AAGTGGATCC ATAAAGTCAA GGTATCGAAA
ACCATATTGA ATGAAGTTAC TTCAGAATTT AGGGCATCGT CGATTAATGC AATTATGGGT
CCATCTGGTA GTGGAAAGAC AAGTCTTTTG AACTTTTTAT CCAATAGATT GTCACACTCT
TCCAAATTTG AATACGGTGG TGAGATAAGT TTGAATGGCG GTGATAAAAT AGCAAGAAAG
GAATTAGCAA GTATTTCTGC ATATGTGACT CAACACGATA ATTCCTTAAT TGGAACTTTG
ACTGTAAGAG AAACCTTGTA CTTTCAAGCT CAATTTAGGT TGCCTCATGA AGAGCATCCT
CGTATTCCTG CCATTATCAA TAAATTGATC AGAGTTACAG GACTCATAGA TTGTGCAGAC
ACTGTTATTG GTTCCGATAT GGTTAAAGGG ATCTCAGGAG GTGAGAAGAG AAGAGTCTCT
ATTGCTATTC AATTGTTAAG TCGACCAAAG ATCTTATTCT TGGATGAGCC TACTTCTGGC
TTAGACTCGG CTACTGCCTT ATCCATTTTG TCACTTTTGA AAGAACTAAG TGAACTCAGT
AAAACAACTG TGATTCTCAC CATTCATCAA CCAAATGAAG ATATGATCGC CAAGTTTGAT
AATGTCTTAT TGATGGCTGG CGGTGGAAGA GTTGTTTACA CAGGTGGGAG TGAAGGTATA
GATGAATACT TCCGATCGAT TAATTACCCA ATCCCTGATG GCGTCAATAA AGGTAACTAT
CTTTTGGATT TGGTTTCAAG AGGTCTTGAT GAGGAATCTT CCGAAAGTGA AAATAGAATT
GCTACTCTTG TTTCTGCTTG GGCAAATACG GAGGGTTCAA GACAAGTTTT GTCAAAGGAT
TTAAAGAGAT CATCACTTGA TCTAACACAG TATCATCGTA AAAAGCTTCC TTTTCTGACA
ACCTTAATGG CTCTAATTAG GAGACTGTTA CTCAATTCAA TAAGATCACC TGATATTCTC
TTTGCAAGGG TGTTCCAAGT CATCTTATTG GCTATCATTC AGACTCTTTA TTTTGCACCT
TTGAGGAATA ACAGGGACGG AATAAGTAAC AGATTAGGTT TGGTGCAAGA AGTGTTAAAT
CTTTACTTCG TTGGATTAGT CAACAACATA TCGGTGTATC CAATAGAAAG AAATATCTTC
TACCAAGAAT ACAAGGACGG TATTTATGGA GTTTGCGAAT TTAGTGCTTC TTACTTGCTC
AACGAATTGC CTACTGAGAT TTTGCCTGTT GTTTTCTTTG CTGTGCTCAT TGTGTTTGCA
ATAGGCTTGC CTCGAAATGC CGCTATGTTC TTCACTATGT TCGTTGCTTC GTTCATCCCA
TTAAACATTG GTGAATCACT TGGTATAATT GTCAATTCCA TTTTCAATCA TTTGGGACTC
GCAACAAATC TCTTAGCAAT CACGATTCTG TTTGCCATTT TCATGGGTGG TACAATGTCG
TTGCAGATGC CTATATTGTT TAGAGCAGTG AACTGGATCA ATCCATTGAA GTTTGCGGTG
GGTATCACTG CCAAGTTGGG TTTCAAAGAT CAGACCTTCG ACTGTGGTTT GGAAACCTGT
ACTTTGGATA CTGGTGATGC TGTATTGTAT TATTATGGGT TAGACCACAA TTTGGGGGTT
TTCTTTGGCG CTCTTGTAGC TTGCCTTGTT GTTTATAGAG CAATAGCAAT CCTTGCTCTC
TATACAAGAG TGAAATACTT CAATTAA
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| Protein sequence | MNAEVLAIEP HHRVSISVRN LVVSVKEKKK KTRQNSNEKE LESSAANPKI LDNVSFDIQA
GEMMAIVGGS GSGKTTLLNT LSTRLNVENH SLDFSGYVEF STPNGDKRIK NSYLQQSDVF
LPGLTAFETL RFQADLRLPP SVSQNEKIAL IESLLDTLEI SHLRNTRVVS FTQRINLSGG
EQRRLSLAVQ LLNKPSVLFL DEPTTGLDAS NALKLVQVLK KLSSPEFGVT VVMSIHQPRL
EITKLFDKIC LITSGGRMVY YGDLAESASY FNRISFLSKN TISSHKSSNF IDYIMDIAVK
DSTTKANEEL TSKRIDRLVE YWNEYSPFNS TDIFDGDGSL KDLMKVFERP KQDRISFFKE
VYILTRRTFL LTYRDKLSLL ALDGGSLVTA VTLGWMFYRP VHDLSGIRSL ISSLYIMMEI
IGFAPVFIEL ERLWGPDGRN FFREYKENYS SIPGFVISRR LGKVLLEDFP LAAIFAIITY
FMWGLREGVG HFFVYFALTV LTSFIGMSTG MAFFAIGSDF AISSMYLNVF YQLQNNASGY
FVNAATMPVY VKWTKYIAYF WYTFGALNAN QLTDWEGVCT SNDQAECVEY SGNYQLSVLG
YPRHWVAEPI GILIAWLAGF YVITIIGLYF KNYEMEMSKT RTNTIGEEET EEDEEEDDEN
ISIFLDQIKL NVITSKWIHK VKVSKTILNE VTSEFRASSI NAIMGPSGSG KTSLLNFLSN
RLSHSSKFEY GGEISLNGGD KIARKELASI SAYVTQHDNS LIGTLTVRET LYFQAQFRLP
HEEHPRIPAI INKLIRVTGL IDCADTVIGS DMVKGISGGE KRRVSIAIQL LSRPKILFLD
EPTSGLDSAT ALSILSLLKE LSELSKTTVI LTIHQPNEDM IAKFDNVLLM AGGGRVVYTG
GSEGIDEYFR SINYPIPDGV NKGNYLLDLV SRGLDEESSE SENRIATLVS AWANTEGSRQ
VLSKDLKRSS LDLTQYHRKK LPFSTTLMAL IRRSLLNSIR SPDILFARVF QVILLAIIQT
LYFAPLRNNR DGISNRLGLV QEVLNLYFVG LVNNISVYPI ERNIFYQEYK DGIYGVCEFS
ASYLLNELPT EILPVVFFAV LIVFAIGLPR NAAMFFTMFV ASFIPLNIGE SLGIIVNSIF
NHLGLATNLL AITISFAIFM GGTMSLQMPI LFRAVNWINP LKFAVGITAK LGFKDQTFDC
GLETCTLDTG DAVLYYYGLD HNLGVFFGAL VACLVVYRAI AILALYTRVK YFN
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