| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_84074 |
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| Symbol | DBP9 |
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| ID | 4839681 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | + |
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| Start bp | 400645 |
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| End bp | 402499 |
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| Gene Length | 1855 bp |
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| Protein Length | 581 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640390996 |
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| Product | ATP-dependent RNA helicase DBP9 (DEAD-box protein 9) |
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| Protein accession | XP_001384736 |
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| Protein GI | 126136425 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.114651 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAA CTTCAGCCTC TGAGGCGTAT GTCGATGACA ATTCATCGTG GGATTCATTC
CATTTGGACG CTCGTCTTGT TCAGGCCATC GATCAGCTTG GTTTTGAACA TCCTACCTTA
ATTCAGGCTA GTGCGATTCC CCTAGCTTTG GAAGAAAAGA GAGATATCAT AGCGAAAGCT
TCTACAGGCT CTGGAAAAAC TGGTGCCTAT GTGATTCCAA TCATTCATAA CTTGCTTACG
GATGCTGAGG TCGAATCGGG AAACCATCAT ATAAAAAGTA TAATCTTGGT GCCTACTAGA
GAGTTGTCCA ACCAAGTTCT CCAGTTCGTT GAAAAACTCT TGGTGTACAG CAACAATAGA
ATTAATGCCA TCAACTTGTC CGCTAATCTC AGTGACCAAG TTGTCAACTC GCTATTGATG
AACAAGCCAG AAATCATCAT CTCCACACCA GCCAAGTTGA TCCAGGTCTT GGAAAAGAAT
GCCAATAAAG ACTTGATCGA TTTGTCTACT GTAAGGAACT TGACCATTGA CGAAGTTGAT
TTGGTATTGT CGTATGGGTA TCTCGAGGAT TTGCAGAAGT TGGAGACCTA TTTGCCCATC
AAGAAGAACC TTCAGACCTT CTTGATGTCT GCTACTGTAA ACGATGACCT CAATGACTTA
AAGACTAGAT TTTGTTCTAG ACCAGCTATT TTGAAGTTGA ACGATGAAGA ATCTGCTCAG
AACAAGTTGA TTCAATACTA CGCCAGAACA ACTGAGTTTG ACAAGTTTTT GCTCGCATAT
GTCATTTTCA AGTTGAACTT GATCAAGGGG AAGACCTTGG TGTTTGTCAA CAACATCGAC
AGAGGCTACA GATTGAAGTT GTTCCTCGAG CAGTTCGGGA TCAGATGCTG TATATTGAAC
AGTGAGCTCC CAATTAACTC CAGATTGCAT ATCGTAGAAG AATATAACAA GAACGTCTAC
AACCTACTCA TTGCTACCGA CGAGACCAAT GACTTCACAG TAGAAAAAGA TGAAGTTGAT
GATGAAGAAG AAGAAGAACA AGAACAAAGC CAAGAGCAAC AACAAGAAGA GAGCCAAGAT
AAGAAAGCTT CTTCAGCTAA GACTAAGCAA TCCAAGAAGT CAAAAAAACA GAAGAAGGAT
ACCGAATACG GTGTTTCCAG AGGTGTGGAC TTCAGGAACG TAGCCTGTGT ATTGAATTTT
GACTTGCCTA CTACGTCCAA GGCATACATC CATAGAATCG GTAGAACTGC CAGAGCCGGC
AAAGCCGGTA TGGCACTTTC ATTCGTATTG CCCATCAAGG AAGTTGGAAA ACACAAAACT
GCATCTTTGT CTACAGCCAA GAAGGACGAG AAAATCTTAC GTCGTATAGT AAAGCAACAG
TCAAAGAACG GATTTGAAAT CAAACCTTAC CAGTTTGATA TGAAGCAGGT GGAAGGTTTC
CGTTACAGAT CGGAAGATGC GTTCCGTGCC GTGACTCAGA CTGCGATCAG AGAAGCCCGT
ATCAAGGAGT TGAAAAACGA ATTGATCAAC TCTGACAAGT TGAAGCGTTT CTTTGAGGAA
AATCCGCAGG ACTTAGCATC GTTGAGGCAC GACAAAGAAT TGCATCCTAC TAGAGTCCAG
AGTCACTTGA AGAGGGTTCC AGACTACTTA TTGCCAGAAA GCGCTAGACA AGACCCAAAG
AAGATTGGAT TCGTCCCATT CCACAAGAAC AAAGTGCACA AGAACAGAAA GAAGAAGCCT
ACAGGAAGAA AGGCTGATCC CTTGAAGTCG TTCAAGAACA GAAAATGAGC ATATAGATAA
AGTGTATAGC ATTCGATCGT AAACTAAAAA TATTGATAAT GTACATGTCT ATAAA
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| Protein sequence | MSTTSASEAY VDDNSSWDSF HLDARLVQAI DQLGFEHPTL IQASAIPLAL EEKRDIIAKA
STGSGKTGAY VIPIIHNLLT DAEVESGNHH IKSIILVPTR ELSNQVLQFV EKLLVYSNNR
INAINLSANL SDQVVNSLLM NKPEIIISTP AKLIQVLEKN ANKDLIDLST VRNLTIDEVD
LVLSYGYLED LQKLETYLPI KKNLQTFLMS ATVNDDLNDL KTRFCSRPAI LKLNDEESAQ
NKLIQYYART TEFDKFLLAY VIFKLNLIKG KTLVFVNNID RGYRLKLFLE QFGIRCCILN
SELPINSRLH IVEEYNKNVY NLLIATDETN DFTVEKDEQQ QEESQDKKAS SAKTKQSKKS
KKQKKDTEYG VSRGVDFRNV ACVLNFDLPT TSKAYIHRIG RTARAGKAGM ALSFVLPIKE
VGKHKTASLS TAKKDEKILR RIVKQQSKNG FEIKPYQFDM KQVEGFRYRS EDAFRAVTQT
AIREARIKEL KNELINSDKL KRFFEENPQD LASLRHDKEL HPTRVQSHLK RVPDYLLPES
ARQDPKKIGF VPFHKNKVHK NRKKKPTGRK ADPLKSFKNR K
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