| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_67940 |
|---|
| Symbol | CDB4 |
|---|
| ID | 4839620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | - |
|---|
| Start bp | 1482492 |
|---|
| End bp | 1483911 |
|---|
| Gene Length | 1420 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640390935 |
|---|
| Product | Curved DNA-binding protein (42 kDa protein) |
|---|
| Protein accession | XP_001385287 |
|---|
| Protein GI | 126137527 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0024] Methionine aminopeptidase |
|---|
| TIGRFAM ID | [TIGR00495] 42K curved DNA binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACCA AGACTGGTAA GTAGCGAACG GAATATTCCG AGAGAAATGG CTATTTTAGA
GTGTTGTGAA ATTGGAGAGA AATAGTGAAA CTTGTCCAAT ACCTCACATA CTGAAAATTA
TGTCCAACTT TTCATTACTG TTCATTGATA CTAACATTCA CAGCTCCCGC TGCTACCCCA
GACTACACCA TTGCCAACTC CGACGTTGTA TCCAAATACA AGACTGCCGG AGAAATCACC
AACCGTGTGT TGGCTCAAGT CATTGCTTTG CTTGTTGATG GCGCTACCAC CTACGAAGTC
TCTTCCAAGG GTGATGAGTT ATTGAACGAA GAATTGTCTA AGATCTACAA CTCCAAGAAG
GCTTCCAAGA CTCCAAAGGG CATTGCATTC CCTACCTGTG TGAATCCTAA CCACATCCCA
GCCCACTTGG CTCCTGTGAG TGAAGATGAT GCTGGTAACA TTACCTTGAA AAACGGCGAT
GTAGTTAACG TGATGCTCGG TGTCCAGCTT GATGGGTTTC CATCCATTGT AGCTCAGACT
ATTGTCATTG GAGCTACTAA GGAATCTCCT GCTGAAGGTA ACAAGGCTGA CTTACTCCAC
GCTGCCTGGA CTGCTTCTGA GGCTGCTATC AGAACTTTGA GACCCAAGAA CAAGAACTGG
GACACCACCA ACGTTGTAGC CAAGGTCGCC AAGGAATTCG ACACTACCCC AGTCGAAAGC
ATGTTGTCTC ATAACCAAGA AAGAAACGTG TTGTACGGTC CTAAAGAAAT CATCATCAAC
CCTACCAAGC AGAACAAGAG CCAGATGGAA ACCTTCAAGT TTGAAGAAAA CGAAGTCTAT
GGCTTGGACA TCTTAATCTC TACTTCTAAG GATGGAAAAG TCAAGCCTTC TGACTACAGA
ACCTCCTTGT ACAAGTTGAC AGGTAACAAC TACTCTCTCA AGATGAAGTT GTCGCACAAG
GTTTTGGCCG AATTCAAAGC TAAGTGCAAC AACCAGCCTT TCCCTTTCAA CATCAGAAAC
TTGGACGAAC CTAAGAAGTC TAGAGGTGGT TTGGCTGAAC CTTCAAACCA CAAGGTCATC
TTGCCATACG ATATTGTCAC CGAAAAGGAA GGCGAATATG TTGCCCAGTT CTTTACGACA
GTTGCTATCA CCAAGAACGG TCTTGTCAAG TACACCCAAC CAGAGTTTGA CCCTGAGCTC
TACAAGACCG AGAAGAAGGT CGAGGACGAG GAAATTGTGC AATTGTTGAC TGAGCCTTTG
AGAATCAAGA AGCAGTCTAA GAAGGAAGAA GCTAAGTAGC TCTGTAGCCT TCCAAAATTG
ACATGACATG ATAGTATCAA AACATCGAAT ACCAAGATAT CTCCAGTATC CAACATTCAT
ATATCCAAAA TATCAGAATC CAAAATACGT ATCTAGCCAG
|
|---|
| Protein sequence | MSTKTAPAAT PDYTIANSDV VSKYKTAGEI TNRVLAQVIA LLVDGATTYE VSSKGDELLN
EELSKIYNSK KASKTPKGIA FPTCVNPNHI PAHLAPVSED DAGNITLKNG DVVNVMLGVQ
LDGFPSIVAQ TIVIGATKES PAEGNKADLL HAAWTASEAA IRTLRPKNKN WDTTNVVAKV
AKEFDTTPVE SMLSHNQERN VLYGPKEIII NPTKQNKSQM ETFKFEENEV YGLDILISTS
KDGKVKPSDY RTSLYKLTGN NYSLKMKLSH KVLAEFKAKC NNQPFPFNIR NLDEPKKSRG
GLAEPSNHKV ILPYDIVTEK EGEYVAQFFT TVAITKNGLV KYTQPEFDPE LYKTEKKVED
EEIVQLLTEP LRIKKQSKKE EAK
|
|---|
| |