| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_47021 |
|---|
| Symbol | |
|---|
| ID | 4839067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | - |
|---|
| Start bp | 1110605 |
|---|
| End bp | 1112134 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640390382 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001385223 |
|---|
| Protein GI | 150865842 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTCA CTATTGACGA GTTGCTTCCC CTGGTGGGCT CTTTTCAAGA TTTCATTTTT
GGAAGTCTCG TACTATGCGA TGCCGCATCC TTGACATCGA TGTACCCTTA TGTCTACTTT
TATATCAAGA ATTTTGATAT TGGAGACGAC GATGCAAATA TCTTTATCTA TAGTGGATAT
TTGGGTGCAG TTTTTACACT CAGCCAGTTC ATAAGTACAC TGTTTTGGAT AAAGTCATCA
AACAGGTTTG GCAATAAAAC AGCTCGATTG TTTTCAAGTA CTGGTACGGC ATTCTCCATC
GTTCTTTATG GTTTGAGCAC AAACTTCTAT ATGGCTCTTT TGGCACGACT GATGTTGGGG
TTCTTCCATG GATACATATT TATTCTGAGA TCGACCGCTG TTGGAGCTGT GGCCCATGAT
AAAACGTGTC GACGTCGTCT CTCTGGAAGC TTCATGCTGA TGTGGAGAAA TGGACAAAGT
CTTGGCTATA TCTATGGAGC ATTAAACACA GGTTTTTCTT TATATTATGA TGGCTTATTG
CCTTCAAAGT ATCGATTTCT TCCTTCTAAC CTCTTGATAT CTGCCTTTAC TGTGGTGCAC
CTCATTATAG GCTGGCTCTT TTTGGACGAA ACGCATGAAC AGAGAAAGTA TGAGCGTGAC
ATAGGTGTAG AAGTTGGTGA TTTTATCAAA CGTCTGTTGG GCTTCAAAGT GCCAGAAAGA
CCCTGGAAGC TAAGAGAAGA CATCAAGGCA AGCCAATTAC TAGACAAGAT GGAGTCTTCC
GAAATGAACA ACAACCTCAC AAAAAACGAC ACCTCTCAGG TGGACTTCCC AGGTGCTGAA
GATGACCTTA CTCAAAAAGA ATCTGAATCA AAGGACGAAC AGGAACTTTT GTCACCAATG
TCATTAAAAG ATTGCATAAC AGGCGTATTT ATGATTTCCT TCCAGCAATG TATCTACTTT
GAGTTTTTGC CTGTTTTGCT TGCCAGTACA CTTAGAGTGG AAGAACTAAA GTTTCCGCTT
CATGTAAGAG GTGGGTTCGG TTTCAAAGAT GAAGGAATCG GGAATCTTTT ATCTGTTACT
GTGACCTTTG GCATGTTAAT GACTGTTCTC CTTCCTCTAA TTAACAAATA TATCAGCACT
AAGCGTGTGC TAAAAGCTGG CTTGCTCGCA TACCCTATTA TCTACTTCTT ATTGCCCTTA
TTTGTTTTCA CACGGCGCCA GTACAATGAG GGAAATCCGA TTCTCACGTT CGTGTTGCTT
GGTGTGACTG GTACAATAGT CTCCTTCATT GACAGGATTT GTTGTGACCA TATTAAAATT
TTATTCACAA AGGTATCTTC TAATACGTCA AGAGAGTTAA TTGAAAGTTA TGCAATGACT
GTTTCCACCT TGGCTCTGTG TGCTGCCCAA ATTATTGGAG GGTTATTAAT TTCGAAGTTC
GATGAGCAAG GTTATGGAGA ATTGTCTTGG TGGCTTCTCT CAATTTGGTC GCTAATGACA
TTCTTACATT CCGTTCTCAT TGTGAAGTAG
|
|---|
| Protein sequence | MEFTIDELLP SVGSFQDFIF GSLVLCDAAS LTSMYPYVYF YIKNFDIGDD DANIFIYSGY
LGAVFTLSQF ISTSFWIKSS NRFGNKTARL FSSTGTAFSI VLYGLSTNFY MALLARSMLG
FFHGYIFISR STAVGAVAHD KTCRRRLSGS FMSMWRNGQS LGYIYGALNT GFSLYYDGLL
PSKYRFLPSN LLISAFTVVH LIIGWLFLDE THEQRKYERD IGVEVGDFIK RSLGFKVPER
PWKLREDIKA SQLLDKMESS EMNNNLTKND TSQVDFPGAE DDLTQKESES KDEQELLSPM
SLKDCITGVF MISFQQCIYF EFLPVLLAST LRVEELKFPL HVRGGFGFKD EGIGNLLSVT
VTFGMLMTVL LPLINKYIST KRVLKAGLLA YPIIYFLLPL FVFTRRQYNE GNPILTFVLL
GVTGTIVSFI DRICCDHIKI LFTKVSSNTS RELIESYAMT VSTLASCAAQ IIGGLLISKF
DEQGYGELSW WLLSIWSLMT FLHSVLIVK
|
|---|
| |