| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_46289 |
|---|
| Symbol | |
|---|
| ID | 4839480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 685245 |
|---|
| End bp | 686564 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640390795 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384796 |
|---|
| Protein GI | 150865538 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.862046 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCCCG TACGGTCCTT CTTTCAAGCA ACGAGAGATA TAAGAATATT ATGGGGTTCA
GTCTTTTTTA GAATGGCAGG TTATGGACTT ACCAACCAAG TTTTGACATT GCATTTGGAA
GCTCTTGGTA TATCTGAGTC AAATATTGGT CTATTTATGT CGCTTACATT AGTGGGAGAT
ACCATGATAT CATATTTTTT GACCTGGAAT GCTGATAGAA TAGGAAGGAA GCGTGTTATG
ATGTTTGGTA CGCTTTTGAT GTTTACATCT GGATTCACAT TTGCATTCAG TTCCAACTTT
TTGGTATTGT TAACAGCAGC AATCTTGGGT GTCATTTCTC CTTCTGGTGA TGAGACTGGT
CCGTTTAAAT CTGTCGAAGA GGCTTCAATT GCCCATTTGA CTCCAGAGAA CCATAGACCC
GAAGTGTATG CATTTTATGG AGTATTTGCA ACTGCCGGGG CTGCTTTTGG ATCCCTAATT
TGCGGATTCT TGGTAGATTA CATGAATGCT TCTGTGGGGT TCCCGATTGA AAAATGCTAC
AGAATTATCT TTTTGGTATA CACTGGGATT TCAATTATCA AATTCATCTT GGTGTGCTTT
CTCTCTCCAA AATGTGAAAT ACATAACCAC GACATGGACA ACATAGCAAG TGAAGAAAAT
TCTTTATTAG AGGCAGTCGA ACAAGATACT ACAAAGCTGA ATTTCGTCAG CTTATCAGAC
AGAACATTTT ACTTACTACC AAGATTGCTC GCCATTTTCA TGTTGGATTC TTTGGGGTAC
GGATTTATGA CATCTACGTG GATCGTGTAT TACTTGAAGA AGACATTTGA AGCTACTGCT
ACCGGGCTTG GGTTGTTATT CTTTTTAACT AATACTGTTA ATTCCATTTC TTCATTGCCC
TCGGCTTATT TAGCCAAATT ATTGGGCCCT GTGAGGGCTA TCTTGTTCAC CCAAGCTCCT
TCGGGGGCAT TCTTCATTGT TGTTGCGTTC CTTTCTAACT TTTATTCAGC TTCATTCTTT
TTGCTCTTAT ACTACATTAC CACTAGTATG GATGTCGTTC CTCGACAGAT TTTGCTAACT
TCTCTTATGC CAAGGGAAGA GTTAACTAAG GTCATGGGAA TTGTGAACAT CGGTAAGACA
TTCGCTAGAT GCATTGGGCC AATATTTACA GGTAAGTTCG CTGCACATGG CGTTCTACAC
TATGGATTTA TAATCAACGG TGGTTGTGTA CTTTTGGCAG ACTTAATATT GGCTACAAAC
TTTTTGCATG TTGATGCTGA AATATTACAT AAACAAAGCA TTGATGCTGG GTTTGATTGA
|
|---|
| Protein sequence | MHPVRSFFQA TRDIRILWGS VFFRMAGYGL TNQVLTLHLE ALGISESNIG LFMSLTLVGD
TMISYFLTWN ADRIGRKRVM MFGTLLMFTS GFTFAFSSNF LVLLTAAILG VISPSGDETG
PFKSVEEASI AHLTPENHRP EVYAFYGVFA TAGAAFGSLI CGFLVDYMNA SVGFPIEKCY
RIIFLVYTGI SIIKFILVCF LSPKCEIHNH DMDNIASEEN SLLEAVEQDT TKSNFVSLSD
RTFYLLPRLL AIFMLDSLGY GFMTSTWIVY YLKKTFEATA TGLGLLFFLT NTVNSISSLP
SAYLAKLLGP VRAILFTQAP SGAFFIVVAF LSNFYSASFF LLLYYITTSM DVVPRQILLT
SLMPREELTK VMGIVNIGKT FARCIGPIFT GKFAAHGVLH YGFIINGGCV LLADLILATN
FLHVDAEILH KQSIDAGFD
|
|---|
| |