| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32086 |
|---|
| Symbol | |
|---|
| ID | 4839106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 648587 |
|---|
| End bp | 652652 |
|---|
| Gene Length | 4066 bp |
|---|
| Protein Length | 1328 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640390421 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384793 |
|---|
| Protein GI | 150865536 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0401498 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATC CGATTCAATC TACTGAGCTT CCAAAGCAAA CAGTTCAACA GGTTATGAGC
CAATTAAATT CTGGCCTCAT GGTCATTGAT ACTCTTCTTC TCAGAGGCCG TGAGAACTTT
CTGGAATGGA AAGACTGGAT GACTGGTATG TTCAGTAGCT GTGTCTTGGC TACAGAGATT
GCTGCTTATC TTTCAGAGAA AGAACTTTCC ATCACCTTTA CGGACCAGCA GGCGTTGAGC
CACAAGCTCC GTGAGCTTAT TCTCAAGTGT ATGAAGCCTG ACGTTCAGTC ATTGTTCACG
CACTACTCTC TGGGAGTCGA AACTTGGAAA GCTGTCGAAA CCAAGTATGC GATCGCCAGC
TCTAGGGATG CGGTCGGTTA TCTCAAGTAC TTATTTGGTG GCCTTGCTGA TCCGACCATT
ACGACTGAAG CTGGGTTCTT GATTGCTGAA AAGTTGACTG CGTTTATGAC TAAGTACGAT
AACGACTCCA TGAAAGCGCT CCTCTTCCTT TATGGTACGG GGAACTCCAA GGTTAGAGAT
CTATTCTTTT CTCAAGTTCG CCTGACTCCC ACCGTGACTG CGGACGAAGT TCTCAATTTC
TTTGCTTATC ATGATGAGCT TACTCCACCT GCCACGTCCT CCGCCTTGCT TGTCCTGTCC
TCGTCTCAAT CTGCTTATGC CCTTACGTCC TTGTCTTCTC CTTCTGGTCC TGTCACCAGG
AACTTGATCA AGGCTAAAGG TACGGATCTG ATTTGGCAGC TTGATTGCTA CAACTGCTAT
GGGTGTGGTC ACATGGCCAA GAACTGCCCT GCTCCTTATC GTGAGGGTGA AGTTCCTCGT
ATGGCTTCTC GCTTCGGTCC TGGCGGTCCA GGAAAGCACC GCAGGAGGCA CGGCTCTCGT
CCAAAGCCTG CTGCTCATTA TGCTCTCGCT GATGATGCTC TGACTTTTGG TTTTGACCAG
CCCGGTGCTT ATTATGCTCA TCTCGCTCAC TACACCCACT ATGCCCTCTT GGCTTCTTCT
TCCTCTGCCA GCTTTATTTT TGATTCAGGT GCTTCTACCC ACATTTGTAA CGATAGAAGT
CTCTTCCATG ACATCGTTCC TCACTCTGGT TCTGTCATGA ACGCCGGTCA CGAGCCTCTC
TCGATTGCCG GTCGTGGTAC TCTTGTGTTT GATCTCCATG GTCAGAAGAT TCGGGTGTTC
AATGTTCTTT ACGTTCCTGA CTGTACTCAG AATCTTCTTT CCATCCTGGC TGTTACTACT
ACGGGCGACA AGCTTGTTAT CTCTCATGAT GATATTGTTC ACCCTAAATA TGGCCAACTT
GCTACCAGAG ACCTGAGAAA TCTTTACTTG CTGTGTCTCG AAATTGTCCG CCCCTCGACT
GTCTCGCGGG TTAACCACTC TGCCTACTCG GCCCCCGCTC CTGTTACGGT CGCTGCTCCT
GCTGCGGACG CTGGTGTGGC ACCTATTTCT GCCTCTGCTC TTGTCCATGC TCGCCTTGGC
CACCCTTCCC CGACTGTCGT TCGTCTGGCC TTGAAATATC CGAACATGCC TCGCACGGCT
GTTCACGACT CGATTTCATG TGAAGCATGT CTTAGCTCCA AGAGCACTCG GGTTATTCCC
AAAACGACCA CCGGCCCAGT CACATCTGCT CCCTTGCAAC TTCTTCACTG TGATTTGTCC
GGTCCTCATG CCGGTGGTCC CTCCTCGTTG TTTTATTTTT GTATTCTTCT TGACGACTTT
ACTCGCTTCA AGGCTGTTGG GCCTCTTCTC AAGAAATCGG ATGCTGCGGA CTTCATTATC
AAAGTTATTA AGGCATGGAC AAACCACTTC TCCAGTCGTG GTGGCTACCG TGTCTGTAAC
TTTCGTTCTG ACAATGGAGG TGAGTTTGTT AATCTGACGC TTACTTCATT CTTTGCGGCA
GAAGGGATCC AGACCCAGCT CACTGTGCCT GGTAACTCAC ACCAAAATGG ACGTGCTGAA
AGAGCGATTC GCTCCGTTCT TGACAAAACG CGTACCATGA TCACTGCGAG CTCTCTTCCT
TCGCCCCTCT TCCCGCATGC ACTCCAACAT GCTGCATTTC TCCTAAACAG GCTACCAACA
CCTGTTCTCC AAAATCGCTC GCCATTTGAA CTCTGGCATG GCGCGAGGCC TATCTTATCT
CAACTTAAAG TGTTTGGGTG TGCTGCCTTT GTGAATGTTC CACCCAATCA CCGTCAACTG
AAGTTGGTCG CTCGTGCAAT CAAGGGTGTT TATCTTGGAT CTGATCCGTT TCGGAAAGCT
CATCTTGTTT ATGATCTCGC TACCAGACAA GTGATTACCT CTTCTCATGT TCGGTTCCAG
GAAAATGTCT TTCCTTTTGC AAGACCTCTG ACGTCTACTG TCGTGTCGGC TACCTCCATT
GGTGGTGGTG GTAGTGGTGG TGGCAGTTTT CCTTCTATTC TGGCACCTGC TCCAGGCCTC
ACTCAGGGTC CTCGTGTGTC TCTGGCCCCA TCTCCCTCGC CTCCATCCAC GCCATCTGGC
AGTACTGTTT CTCAATCGCC AGGTTCATCT GCAGCTCTGT CGTCTGCTTC GGCACCGGTC
TCTCCTGCTG CATCTACTAC TCCTCTGTCG CAGCCTCCGT CGACTCCTAC TCCGGCGCCT
GCTTCTACTC CGGTACCTTC TTCTGCTCCG GTACCTTCTT CTGCTCCGGT ACCTTCTTCT
GCTCCGGTAC CTTCTGCTAC TCTGGTACCT TCTGATACTC TGGTACCTTC TACTTCTGCG
GCCCTAACTG CACCATCCCG TGCCGTTGTT CTGGCTCAGA GGTCCGATCT GCCTCCCTCT
GACTCCTACG AGCTGTCTGA CGACTCCTAT ACAGCTCCTG CTTCTCGTGA GGTACCAACT
CTTACTGCTC CTCGTACGGT ACCATCCCTT CCTGCTCCTC GTAAGGTACC CTCCCTTCCT
TCAACTCGTA AGGTGCCATC TCTTCCTTCT ACTCGTACGG TACCTTCACT TCCAGCACCT
CGTACAGTAC CCTCCCTTCT TCCTGTTCCT CGCAATAGAC CATCTGCTCC TACTGCTCCT
CTCGGTCTTC CTCATCCTGC GGTTGAGGCT CCATCCCCTA TCCCTGGATC TTCATCAGCC
ATACCCATGG AAATAGACTC TACGGATACT GAGCCTGAAC CTATGTCTGA AGATGGCTAT
GACATGGAAG TGGTCTCTGA TCAGGAATTC TTCGATGCTC CTGAGCAATA CGGTACTCAT
CCCCGTTCGT CACCTTTGAT CTCCACGCGC TCCTCTATGG ATGTTCTGCT GGATCAGGAA
GAATATCCAG ATCCGTCCAC CTATATGGAC ATCGTGGTGA TGGATTCGGA TGACCTTTCT
TCTTATCATG ACTCGGAAAT GGAGGATGCC TCCGACATGG ATCCCCTTCC GCTTATTCGT
CCTACTTCTA ATATGGAAAT GGAGGACACC TCCGTCACTT ATCCTCTGCC GCTCACTCGT
CATACTCCTA CTACGCAGAC TGTGGTGTCC TCCACTCCTC CACCTCCTCC TCAACCACTG
CCTCGGGTCG TTCAATCCGA CTCTCCACAA TCCTCTCCTA TTATTGAGGT TCCTGATTCT
CCCCCACTTC AATCTCGTCC TCAGCAATTC CTCCTCCCTC CGGGTCTTTC TCCTACTCGT
CTCATTGAGT TGCCTGCTTC AGGGGGGATG GAACTCATCC TATCGCTGAC TGACCGTGCC
TTGGTCCCTC TGAATTCTGA GGCCAACAAC AAACTAACTC ATCTTGTTGT ATCGCGTCCT
CCTCCGGTGA ATGGGGTTAA GCATAAACTC ACCCCGGTTC CGTCGCGTGA TGGAACACAT
CCACAAACAC TCAAGCGGGC ACACAGACCA ATACTTGTTC CAACACGGTC ACAGAGACAA
CAGGACAATC AAAATTTGAT CAACTATCCA CAGAGACAAC AAATTGAGTA CATCACCACC
GATAGTGAAT CGTTTTCAGA AGCAGACAAT CCCAACGATC TCGACTATAC TGAAACACAT
GGCCAACCTC TCATTATGGG TAGCAGTGCA TTTATGGTCA CCATAA
|
|---|
| Protein sequence | MNNPIQSTEL PKQTVQQVMS QLNSGLMVID TLLLRGRENF SEWKDWMTGM FSSCVLATEI
AAYLSEKELS ITFTDQQALS HKLRELILKC MKPDVQSLFT HYSSGVETWK AVETKYAIAS
SRDAVGYLKY LFGGLADPTI TTEAGFLIAE KLTAFMTKYD NDSMKALLFL YGTGNSKVRD
LFFSQVRSTP TVTADEVLNF FAYHDELTPP ATSSALLVSS SSQSAYALTS LSSPSGPVTR
NLIKAKGTDS IWQLDCYNCY GCGHMAKNCP APYREGEVPR MASRFGPGGP GKHRRRHGSR
PKPAAHYALA DDASTFGFDQ PGAYYAHLAH YTHYALLASS SSASFIFDSG ASTHICNDRS
LFHDIVPHSG SVMNAGHEPL SIAGRGTLVF DLHGQKIRVF NVLYVPDCTQ NLLSISAVTT
TGDKLVISHD DIVHPKYGQL ATRDSRNLYL SCLEIVRPST VSRVNHSAYS APAPVTVAAP
AADAGVAPIS ASALVHARLG HPSPTVVRSA LKYPNMPRTA VHDSISCEAC LSSKSTRVIP
KTTTGPVTSA PLQLLHCDLS GPHAGGPSSL FYFCILLDDF TRFKAVGPLL KKSDAADFII
KVIKAWTNHF SSRGGYRVCN FRSDNGGEFV NSTLTSFFAA EGIQTQLTVP GNSHQNGRAE
RAIRSVLDKT RTMITASSLP SPLFPHALQH AAFLLNRLPT PVLQNRSPFE LWHGARPILS
QLKVFGCAAF VNVPPNHRQS KLVARAIKGV YLGSDPFRKA HLVYDLATRQ VITSSHVRFQ
ENVFPFARPS TSTVVSATSI GGGGSGGGSF PSISAPAPGL TQGPRVSSAP SPSPPSTPSG
STVSQSPGSS AASSSASAPV SPAASTTPSS QPPSTPTPAP ASTPVPSSAP VPSSAPVPSS
APVPSATSVP SDTSVPSTSA ALTAPSRAVV SAQRSDSPPS DSYESSDDSY TAPASREVPT
LTAPRTVPSL PAPRKVPSLP STRKVPSLPS TRTVPSLPAP RTVPSLLPVP RNRPSAPTAP
LGLPHPAVEA PSPIPGSSSA IPMEIDSTDT EPEPMSEDGY DMEVVSDQEF FDAPEQYGTH
PRSSPLISTR SSMDVSSDQE EYPDPSTYMD IVVMDSDDLS SYHDSEMEDA SDMDPLPLIR
PTSNMEMEDT SVTYPSPLTR HTPTTQTVVS STPPPPPQPS PRVVQSDSPQ SSPIIEVPDS
PPLQSRPQQF LLPPGLSPTR LIELPASGGM ELILSSTDRA LVPSNSEANN KLTHLVVSRP
PPVNGVKHKL TPVPSRDGTH PQTLKRAHRP ILVPTRSQRQ QDNQNLINYP QRQQIEYITT
DTVHLWSP
|
|---|
| |