Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_17702 |
Symbol | |
ID | 4839524 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009045 |
Strand | + |
Start bp | 1396779 |
End bp | 1398056 |
Gene Length | 1278 bp |
Protein Length | 411 aa |
Translation table | 12 |
GC content | 40% |
IMG OID | 640390839 |
Product | predicted protein |
Protein accession | XP_001384956 |
Protein GI | 150865646 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.257016 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCATCTG GAAATACCTT CTGTGGAACT TTGGTGGAAT TTCCTGGAAT CGGAATTGAC AAGTTCGGCT CCGAATGTCA AATCTACTTG TTAACCCACC ATCATGCTGA CCACACAGTG GGTTTGGCAA ACAAGTCATT TTGTAGACGT GTTTATTGTA GTCAAATGAC GAAAGATTTG ATATCCCAAA GTCAGCAGTT TGAAGATAGT TTGCGATATC TAGTTCCTAA ACAATATAAT GAACCGTTTG TGTTAACGGT CAGCGATGAA GAGGTCACTA TAACATTGAT TCCTTCATAT CATTGTCCCG GGTCTACCAT GTTCTTAATA GAGAATAGAA GGGCTTCTGT ACTATTTACT GGAGATATCA GGGCAGAGAC ATGGTGGGTC AACTCTTTGG CCAAGAGTCC CTTTCTCTTC CCCTATACCA TTGGTGCGAA AGTACTAGAT CAACTATATA TAGACACTAC ATTTTCCTAT AGGGGAGAAC CGTATGTTGA GATACCAGAG AACAACGAGG GTATCAAAGT TATCATTGAA ATGCTAAAGA ATTTTCCCAT CAACGACCCG GAAATCCAGT TCTGTTTCAT GGATAGCACA TCTGGATTTG AAGAGGCTTG GGTGCAAATT ATCAGTTCCA TTGAGGGCAG CTTATCATTG AGCGCCGATT TACGTAGAAG AATCGAACTC ATTGCGTCAG AAGGTACTTA CAACTATGGG AATGCTTGCA GAAAGCTTTT AGGAAAAGTT TGTAATGGTC CTATCTTTCA TGTTTTGAGC AAACCGGACG ACGCATATGA GGTGAAGAAC TGCAAAATAC TTGTGAAGAT CTACCAGTGC ATAAACTTTA ACATAGTCGA TTTCTTAGGA ACAAGCATGC CCATACCATT GAGTTCTGTT GATAGGTCTC TTTTCAAAAG TATTGAAACT ACAAAAATGG GAAATAAACT TTGCATGTAC GGCAATAGAA AGTGGATACT ACCAAAAGAT GGCAAAGAGC TTCTTCCACT AGACCTCAGA CTTATATTCT CACGACACTC CTCATACACT GAAACATTAC AGTTTACATC ATTATTCCGA CCGAAGCTGG TGTTTCCATG TACTGAATCC AAACAAACAT GGTTAGGAGG TTTCAGTTGC GAAAGGATCT TTGGACAGTT GTGTCAAAAT CCTGAAGGTG AACATCCGTA TGACATTCGA ATGTTCAAGC GATATGGACG ACCAGTTCTA TCTGCTGAAG CTGGTGTTCC CACTATCAAC AGATGGAATT TGAACGAA
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Protein sequence | MASGNTFCGT LVEFPGIGID KFGSECQIYL LTHHHADHTV GLANKSFCRR VYCSQMTKDL ISQSQQFEDS LRYLVPKQYN EPFVLTVSDE EVTITLIPSY HCPGSTMFLI ENRRASVLFT GDIRAETWWV NSLAKSPFLF PYTIGAKVLD QLYIDTTFSY RGEPYVEIPE NNEGIKVIIE MLKNFPINDP EIQFCFMDST SGFEEAWVQI ISSIEGSLSL SADLRRRIEL IASEVCNGPI FHVLSKPDDA YEVKNCKILV KIYQCINFNI VDFLGTSMPI PLSSVDRSLF KSIETTKMGN KLCMYGNRKW ILPKDGKELL PLDLRLIFSR HSSYTETLQF TSLFRPKSVF PCTESKQTWL GGFSCERIFG QLCQNPEGEH PYDIRMFKRY GRPVLSAEAG VPTINRWNLN E
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