| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_83582 |
|---|
| Symbol | GEF2 |
|---|
| ID | 4838406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | - |
|---|
| Start bp | 568325 |
|---|
| End bp | 570812 |
|---|
| Gene Length | 2488 bp |
|---|
| Protein Length | 818 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640389721 |
|---|
| Product | chloride channel, possibly voltage gated |
|---|
| Protein accession | XP_001384405 |
|---|
| Protein GI | 150865261 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0038] Chloride channel protein EriC |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.172936 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTAT TCGCCGCTGG AAGAGGCGCC AACGTCTCAT ACACAGATGA GGACATCCCG
ACTTTGTCGT ATAACAATCT GGACTCACTT GAACATAATA TTGTTATCAG CACTACAGCC
AAATACTATG AGAACAATAC CTACATTGAC TGGAGCAGAG AGTCTCTCAT AGTACCGTCC
ACATCTCTGT TCACATCACG AAAATGGTTC ACATTAATAG TTCTGTCAAT AATTGTAGGG
TACACAGCTG CTTTCATCGA CTTGCTGCTG GTTTGGCTCA ATGACTTACG TAAGGGTGTT
TGTTTCAGCA AGGTAGATAC ATGGTCTTTG TTGAATCCGT ATCTGACATG TCCAGCCGGT
AAGTGGCACG ACTGGTCAGT TATCTTGTTC AACGCCAAGG GGTCTGTTTC CAACTGGTTG
GTAAACTTCC CAATCTATAC CCTTTTTGCA TTCTGCTGGA TCACTTTAGC AGCTTATATT
ACTATCCATA AGGATCCGTT GATTAAGCAA TCTGGTATTC CTGAGATCAA ATTGATCATC
TCGGGCTTCA ATTACCGTAT CAACTACTAT CTTGGCTTGC AGACCTTGTT TTACAAGACG
GTGGGTTTGA TTTTGGTGGT ATCTTCAGGA CTCTGGTTGG GCAAAGAAGG ACCCTTGGTT
CATGTTTCTT GTTGTATCCT CAACATTCTA TACGGCTTAC TTGTAAACAC AAGCTTTGAG
AATGAAGCTG TACGTAGAGA ATTGTTGAGT GCTGCCACTG CAACAGGAAT TGCTGTTGCA
TTCAGCTCGC CTATAGGTGG AGTATTATTT GTTCTCGAGA GTATGGCGAC TTTTTTCACA
CCCACAAAGA TCATGTGGAA TTCGTTCATT ACAGCATCTG TAGCTGTTAT TTTCCTCACT
GGATTCAGAG TATTCACAGA CGGCCTGAAC TTCCAAGAAA AGGACTTATT CCTGGTGGAA
TTTGGGAACT TCTCTTGGTT GTTCTTGGAA ATCATCCCAT TCATCACTTT GGGAGCTTTG
GGTGGAATCT ACGGCTACTT GTTCATAACT GTAAATTCGT ATTTTGACAA GTCCGGTGTC
CGCCATGTTA TCCAAAATAG ATTGCTTTCA CTCGTAGGTG CGAGCGGTGT AAAAGCTGGA
CAATATCTCG AAGTGTTCGC TGTCTTGCTA GTAACCAGTA TACTTACCTT TCCCATTGAC
GAAACCAAGT TGCAGTTGAA CACTTTCTTA ACTAACTTGT TCACTGCTTG TCCTACAGAT
ACTGATACTC TGGAGGCTAT CACTTTCATT TGTCTGTCTT CTAACGGAAT TACCATCTTG
AAGTTGTCCT ACATCCTCAT CCAGGGATTC ATATTGTCCA CTTATAGTTT TGGAGTCAAC
CTCCCAGGAG GAATTTTGAT GCCATCGTTA GTACTTGGAG CAACTTCGGG TAGACTTCTT
GGTTTGATAA CTCAAGCAAT CCAGACCAAG TTTCTTAGCT CTGAGTTCTT AGCTACTTGT
ACCGAGAGTT CTTGTATAGT ATCTCCTGCC TCCTACGCTG TCATCGGCGC AGCTGCATTC
ATGACTGGTG TGACCAAGTT GACGATGTGT GTTGTAGTAA TCATGTTTGA GTTGACAGGT
GCTGTCTCAT ACGTTTTGCC AATTATGTTA GCAGTGATGA TTCTGAAGTT CGTAAACGAT
GTTTTGTGCA CCTCTAACAT CTATGACACC TTTCTAAAGA ACAATTTTAA CCAGCTGGAA
CAGAATACAT ATGGTTACCC TAATGAAGGA AAAGGTGCTG GGCTAGTCAA CTTCACCAGT
TTGACTTCTA CTGTCAAGGA TAAACTCCCT GACATTACCG TTAAGTCCAT AATGGTTCCT
CTTAACCGGA CAAAGTGTCT TTGTCTTGTT CCTGAAACAC ACTACACGGT AAACTCGCTT
ATCGAATTCA CCAACGGCGA CACTCATGAA GGTTACCCAT TAATCCTCAA GTATGGAAAC
CCTTTGTATC TAGGGTACGT CAACAAACAT GAGCTTTTCT CCAAGATCTC CAATATCGAC
GATCGCAATG CTGTAATAAG TTTCCAGGTA GATGGGTTAC TGAGAGTGGC CATCTCGCAA
CAGCTTCATT ATGAACGATC CATCGGTTCA GTATTACAAC AGATAGACAT CCCCGTAGAA
AGGTCAATGA TAATTTTCAA TGAGTTGACT TCTGCAGTTC TCGTTCTCGA GACGTTTGAA
AAGATGCATG TAAATTACTT TGTCATTTTG GATAGCAACA ACAGAAACGG CCAAACAATG
GCAGGGTTTG TAGATAGATT CGTCATCGCT CATTTGATCG ACCTGCAATT TAAGGACTTG
GAAGATGAAC TTGTGGGAGT GGAAGCAGCC AGCGAGTTTG ATATAGAAAA TAACTTGGAG
GATGAGACAC TCTTAGATGC AAGAAGGAAA AGACTTAGTA TAGAATTAAT CACATAGGTA
TGTATTTATA GAGCTAATTG ACAAACCT
|
|---|
| Protein sequence | MDLFAAGRGA NVSYTDEDIP TLSYNNSDSL EHNIVISTTA KYYENNTYID WSRESLIVPS
TSSFTSRKWF TLIVSSIIVG YTAAFIDLSS VWLNDLRKGV CFSKVDTWSL LNPYSTCPAG
KWHDWSVILF NAKGSVSNWL VNFPIYTLFA FCWITLAAYI TIHKDPLIKQ SGIPEIKLII
SGFNYRINYY LGLQTLFYKT VGLILVVSSG LWLGKEGPLV HVSCCILNIL YGLLVNTSFE
NEAVRRELLS AATATGIAVA FSSPIGGVLF VLESMATFFT PTKIMWNSFI TASVAVIFLT
GFRVFTDGSN FQEKDLFSVE FGNFSWLFLE IIPFITLGAL GGIYGYLFIT VNSYFDKSGV
RHVIQNRLLS LVGASGVKAG QYLEVFAVLL VTSILTFPID ETKLQLNTFL TNLFTACPTD
TDTSEAITFI CSSSNGITIL KLSYILIQGF ILSTYSFGVN LPGGILMPSL VLGATSGRLL
GLITQAIQTK FLSSEFLATC TESSCIVSPA SYAVIGAAAF MTGVTKLTMC VVVIMFELTG
AVSYVLPIML AVMISKFVND VLCTSNIYDT FLKNNFNQSE QNTYGYPNEG KGAGLVNFTS
LTSTVKDKLP DITVKSIMVP LNRTKCLCLV PETHYTVNSL IEFTNGDTHE GYPLILKYGN
PLYLGYVNKH ELFSKISNID DRNAVISFQV DGLSRVAISQ QLHYERSIGS VLQQIDIPVE
RSMIIFNELT SAVLVLETFE KMHVNYFVIL DSNNRNGQTM AGFVDRFVIA HLIDSQFKDL
EDELVGVEAA SEFDIENNLE DETLLDARRK RLSIELIT
|
|---|
| |