| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_83216 |
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| Symbol | RRP5 |
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| ID | 4838895 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009044 |
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| Strand | - |
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| Start bp | 739164 |
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| End bp | 744437 |
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| Gene Length | 5274 bp |
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| Protein Length | 1699 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640390210 |
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| Product | Part of small ribosomal subunit (SSU) processosome (contains U3 snoRNA) |
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| Protein accession | XP_001384440 |
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| Protein GI | 150865289 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0841775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTCAAGGCTT TCAATATGCT GGAAACTTAC GGGTCCAAGT CGGTGCTCAG CAGCAGCGAA
GTCTCCTTCC CAAGAGGTGG AGCCACTGCC TTGACTCCAC TTGAAGTGAA GGAAATCTCC
AATGAAGCCA CGAAAGATGT TCTTTTTGAA GCCGCTAATT CTGCAAAGAG AACTGCTTCC
AGCAAGACAG ACAGACCAGC CAAGAAGGCA AGAAGAGCTC CTAAGAAAAA GAGCCAAGAA
GATGCAGACG AAGCAGAAGA AGACTCAAAA GTCCAGATCG AGAATATCAC CTTTAAGAGT
TTGATTCCAG GCACTCTCGT ATTGGGTCAG ATTACTGCTG TAGGAAAATT GGATATCACT
TTGGCTCTTG GCGATAACCT CGTTGGTTAC ATCCCCATTA CGTCCATAAG CGAAGAGTTG
ACCATCCAAA TTGAACAGTA CGAAAAGGCC GAAGATTCAG ATGAAGAATC AGAAGACGAA
GAAGATGAAC AAGAATCGGA AGACGGCAAG ATAAGAACCG CAACATTAAA GAGCAAGTCA
CGCCCAGAAT TCCCCGAGCT CAAGACGTTA TTCTCCATTG GCCAATGGTT GAGGGCCAAG
GTAGTCCAGC CATCTTCCTC CCAGAACCAG AACCAGAAAC AAAAGAAGAG AATACAGCTT
ACTATCGAAC CAGAAACAGT CAACCAGCCT CTTGAAGACG AAGACTTGAT TCCTGGAAAT
GCCTTACAAT GTTCTGTCAA GTCTGTGGAA GATCACGGGA TTATCATGAA TACCGGCAGA
GACGGCTTGT CAGGTTTCAT CTCCAACAAG GAAATCAAGA ACACCCCAGA CTTGGACGTT
GAAATATTGA AACCTGGAAA AGTCTTGCTT ACTAGTATTG TATCCAAGTC AGCTTCTAGA
ACCGTCAATT TGAGACCGAT TCACTCGACT TCAGTATCGA AAAAGTCGGC TGTAACATCC
ATTTCTTCTG TAGATGCCGT TTTACCAGGT ATTTTAGTGG ATGCACTTGT AGCTGATGTC
ACAAAGAATG GTTTGATAGT CAAGGTATTT GGATTGGTAG ATGCTACCAT TAACTTGGCC
CAACTACAGG AATTTGACTT CAATGCTTTG AAACACAAGT ATGCCATTGG TAACAACATA
AAGGCTAGAG TCATGGCTGT TCTCACCCGA GCCGGATCTA AGAAGTTGAT CTTATCGCAT
TTACCCCACG CCATTTCCTA CACCAGTACT GCCAGCAACC CAGATGCTTT AGAAGCTTTC
CCAATTGGTC ATGTGTTGGA AGATGCTGAA GTTGTGGGCT CTGATCCAAA TTATGTCTTC
CTCAAGTTTG GAGGTTCTAT TCTTGGTCAA GTGCACAACT CCAAGATTGA CAAGGATAAG
ACACTTGAGC ACGACTTTAA TCTTGGCTCA AAGCACAGTG CCAGAGTGAT TGGCTTCAAT
AGCATAGACA ACTTATTGGT GTTGACTATG GAATCCCATG TCATAAACTC TCAATACTTA
CATGCTTCTG ATGTTCCTAA CGGAACCGCC GTCAAATCAT GTGAGATCAT CAAAGTTTTA
CCTGAAGCTG GTGGAATTGT CATTAAAGTT CTCGACGAGT TCGAAGGATT TGTACCAGGC
AGCCACATGT CTGACATCAA ATTGGTATAC CCTGAAAGAA AGTTCAAGGT AGGCAGTAAG
GTCAGAGGCA GAGTGTTGAG CAAACAAGGT AACAAGTTAG TAGTGACATT TAAGAAGTCG
TTAGTTAACA TTGAAGACGA TGAAGTTTTG GCCAGATTCG AAGATGCAAA AATTGGCTTC
AAGACCCCAG CCATTGTTGA AAAATTTGTT CACAATGGTG CCATTGTGTC TTTCTTTGGT
AACTTGAGAG CTTTCTTGCC CAAAAACGAA ATCTCAGAGA CATTTGTAAG CAACGCTAGT
GATTACTTGA GGTTGGGACA AACTGTCAAC GTCAGAGTGT TAGACGTCAA ACAGGAAGAA
AAGAGAATGC TAGTCACCTT GAGGCATTCG TCGGAATTGA CCAACACCCA AAAATCATCC
ATTGATGACT TGCAACCAGG GAAATCTATT GTAACCGTAT CTGTTGTAGA AAAGACCAAG
GACTCGGTTA TTGTTGAGTT GGAAGGCAAC AGCTTGCGTG GTGTCATATA TACGGGCCAT
TTGACTGATG GCAACTACGA ACAAAACAGA GCCTACGCTA AGAAATTATC CATTGGCGAA
AAGCTTGAAG TTCTTGTGCT CGAAAAGGAT TTAAAGGCTA GAACGGTTAT TGTTTCAGCC
AAGAAATCCT TGATCGACGC TGCTAAGCAA GACGCCATCC CAGCTTACTT CAAGGATATC
AAGGTGGACA ACAAGATGTT GCGTGGTTTC GTCAAGTCTG TCACCAACAA GGGGTTGTTC
GTATCCTTTG CTGGTAAGTT GACTGGTTTG GTGTTGGCTA AATATGCAAC CAGCAACGAA
AACGAGGACT TATTGAAGAA GTTCTACAAG TACCAATCGA TTGCTTGTCG TGTTATCAAC
ATTGATGAGG AAAACAAAAG ATTCTTGTTG ACTTTGAAGG ATGTCAACGG CTCCAAGAAC
ATCGACTCTG AGGCCGTAGT GAACCCAGTA GACACTAGCA AGAAGTTGAT TGGTGACTTT
GTTCCTGGTA TCGCTACGAA GGCTGTCATC AAGTCGGTCA AAGGTACTCA ATTGAACGTT
CAGTTAGCTG ATAACTTACA GGGCAGAATT GCAGCTACTG AGTGTTTCAA CTCCTGGAAT
GAAATCAAGG ATAAGAAGCA GCCATTGTCT CAGTTCCACA AGGGTCAAGT TATTGATGTT
AAGATTATCG GTTTCCACGA TGCTAAGAAC CACAAATTCT TACCCATAAC CCATACCAGA
TCTAATAAGA ACATCATCCT TGAGCTTTCT CTCATCAAGA AGGATCTCGA ATCTTCCACT
CCATACCAGG AGTTGACCTT TTCTAGCATC GTCCCCGGTT CCCAGCACAT TGTATTTGTC
AACAACATTG CCAAGGGCTA TGTCTGGGCA TCATTATCTC CAAACATCAG AGGACGTATT
TCTTTCATGG AATTGACAGA CAATGTTTCA GTGTTCGATG ATCTTGAAAA CAACTTGCCT
ATTGGTTCTG CCATCAGTGC AACTGTTAAG GAAGTTGACA ATGAGCACCA CTCGGTTGTG
TTGACAGCCA GAAAGAACAT GGTGGCTTCT ATCAAGGATG TCAAAGTTGG TCAAAAGTAC
CCTGCCAGAA TTTTGAAAGT CAGAGACACC TATGTTCTTG TCGAATTGGG CGAGAAGGTT
GTAGCCTCTG CATTCATTAC TGATGCATTG GACAACTATT CTGACAAATT GGAATCTGTC
TTTACCACGA ACGAGTTTGC TACTGCTACC GTCTTAGACA TCGACACCGA TTCAGAGAAG
ATAGCTGTCT CCTTACGTAC CGACAGCCCT ACTGACAAGG TGATCAACTC CATTGCTGAC
TTGAACCGTG GCGATGTCGT CAAGGGATTT GTCAAGAATG TAGCCAACAA CGGTGTATAT
GTTTCATTGG GCAGATCTGT TCATGCTTTG GTCAGAGTTG CTGACTTGTC TGACGCCTAC
TTGAAGGACT GGAAGAAGTA CTTCAAGCCA CATCAGCCTA TTTTGGGTAA GATCTCAGCC
TGTAAAGAAG AAGGCAGAGT ATTGATGACT TTGAAGGAAA GTGAGGTCAG CGGTGAGTTA
AACGTCTTGA AGAGATTCGA CGATTTGGTC GTTGGTGAAA TCTTTGAGGG TTCTGTCAAG
CGTGCTACTG ATTTTGGTGT ATTTATCAAG TTGGATGGTA CTCTCAACAT CACTGGTTTG
TGCCACCACT CTCAAATTGC TGACAAGGAT GTAGATAATG TTACTTCCTT GTTTGGTGAA
GGTGACAGAG TCAAGGTCAA ACTCTTAGCT ATTGACAGCG ACAAGAAGCA GTTGTCGTTG
GGTATGAAAG CTTCATACTT TACTACTGGT GAAGAAACTG AAGGAGAAAC CGACGACATA
GAAATGAAGG AAAGCGATGA CGAGTCTGAA GTTGAAGAAT CCGAAGAGGA AGAAGCCGAA
AACGACGAAG ATGACGACGA CGACGAAGTC ATGGAAGCTT TTGCCGAAGA AGCAGACAGC
GAGGAAGACG AAGAAGAAGA CGTCGAAGAA AAATCGACTG GTTCTTTATC TGGGTTGGCC
ACTAATGGAT TTGATTGGAC TGCTTCCATC TTAGACCAAG CTGAAGATGA TGACGAGTCT
TCTGACGAAG AGGATTTCAC CCAGGACAAG AAGTCCAAAA AGAAAAAGCA GAATATCGTT
GAAGACAAGA CTGCTGACTT GAACACGCGT GCTCCACAGT CCGTGGCCGA TTTCGAGCGT
CTTCTTGTAG GAAATCCAAA CTCTTCTATT TTGTGGATGA ACTACATGTC TTTCCAATTA
CAATTGAGTG AAGCCGACAA GGCTCGCGAG ATCGGGGAAA GAGCCTTGAA GACCATAAAC
TACCGTGACG AGCAAGAGAA ATTAAACATT TGGATTGCCT TGCTCAACTT GGAAAACACT
TTCGGTACTG ATGAATCCTT GGAAGAGATT TTCAAGCGTT CGACCCAGTA CATGGACTCA
TTGACCATGC ACCAGAAGTT GGTCAGTATC TACAGCATGT CGGAGAAATA CTACCAGGCT
GAAGAGTTGT ATAAGGTGAT GACTAAGAAG TTTGGCAAGT CTATATCCGT ATGGGTTCAA
TATGGTTCCT TCTTGTTGGA CCGTAAGTTA CAGGAAGAAA CACATGAGGT ATTGGCCAAG
GCATTGCAGA CTTTACCCAA GAGAGATCAT ATTGAAGTTG TGAGAAAGTT CGCACAACTC
GAGTTCAGCA AAGGGGATGC TGAACAGGGT AGATCCTTGT TTGAAGGTTT GGTTGCCGAT
GCTCCTAAGA GAATCGACTT GTGGAACGTT TACGTGGACC AAGAAATCAA ACAAGACAAC
AAGAGCAAGG TTGAAGACAT CTTTGAGAGA GCTTTGGCTA AGAAGTTGTC AAGAAAACAG
GCCAAGTTCT TCTTCACCAA ATGGCTTGCT TTTGAAGAAG AAAAGGGAGA TGAACAGATG
GCTGCTAGAA TCAAAGCCAG AGCCGTTGAG TACGCCCAAT CTCACAAGTA GCATTACACT
GCAAACAAAC ATGAAAACCT CACAAGCATT TTTATTTTTA TCATTACAAC TGTCTATAGA
ACCTATTGTA TATTGCATTT ATTTACTTCA TTCATTTAAT ATAGAGAATA GTTT
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| Protein sequence | MSETYGSKSV LSSSEVSFPR GGATALTPLE VKEISNEATK DVLFEAANSA KRTASSKTDR
PAKKARRAPK KKSQEDADEA EEDSKVQIEN ITFKSLIPGT LVLGQITAVG KLDITLALGD
NLVGYIPITS ISEELTIQIE QYEKAEDSDE ESEDEEDEQE SEDGKIRTAT LKSKSRPEFP
ELKTLFSIGQ WLRAKVVQPS SSQNQNQKQK KRIQLTIEPE TVNQPLEDED LIPGNALQCS
VKSVEDHGII MNTGRDGLSG FISNKEIKNT PDLDVEILKP GKVLLTSIVS KSASRTVNLR
PIHSTSVSKK SAVTSISSVD AVLPGILVDA LVADVTKNGL IVKVFGLVDA TINLAQLQEF
DFNALKHKYA IGNNIKARVM AVLTRAGSKK LILSHLPHAI SYTSTASNPD ALEAFPIGHV
LEDAEVVGSD PNYVFLKFGG SILGQVHNSK IDKDKTLEHD FNLGSKHSAR VIGFNSIDNL
LVLTMESHVI NSQYLHASDV PNGTAVKSCE IIKVLPEAGG IVIKVLDEFE GFVPGSHMSD
IKLVYPERKF KVGSKVRGRV LSKQGNKLVV TFKKSLVNIE DDEVLARFED AKIGFKTPAI
VEKFVHNGAI VSFFGNLRAF LPKNEISETF VSNASDYLRL GQTVNVRVLD VKQEEKRMLV
TLRHSSELTN TQKSSIDDLQ PGKSIVTVSV VEKTKDSVIV ELEGNSLRGV IYTGHLTDGN
YEQNRAYAKK LSIGEKLEVL VLEKDLKART VIVSAKKSLI DAAKQDAIPA YFKDIKVDNK
MLRGFVKSVT NKGLFVSFAG KLTGLVLAKY ATSNENEDLL KKFYKYQSIA CRVINIDEEN
KRFLLTLKDV NGSKNIDSEA VVNPVDTSKK LIGDFVPGIA TKAVIKSVKG TQLNVQLADN
LQGRIAATEC FNSWNEIKDK KQPLSQFHKG QVIDVKIIGF HDAKNHKFLP ITHTRSNKNI
ILELSLIKKD LESSTPYQEL TFSSIVPGSQ HIVFVNNIAK GYVWASLSPN IRGRISFMEL
TDNVSVFDDL ENNLPIGSAI SATVKEVDNE HHSVVLTARK NMVASIKDVK VGQKYPARIL
KVRDTYVLVE LGEKVVASAF ITDALDNYSD KLESVFTTNE FATATVLDID TDSEKIAVSL
RTDSPTDKVI NSIADLNRGD VVKGFVKNVA NNGVYVSLGR SVHALVRVAD LSDAYLKDWK
KYFKPHQPIL GKISACKEEG RVLMTLKESE VSGELNVLKR FDDLVVGEIF EGSVKRATDF
GVFIKLDGTL NITGLCHHSQ IADKDVDNVT SLFGEGDRVK VKLLAIDSDK KQLSLGMKAS
YFTTGEETEG ETDDIEMKES DDESEVEESE EEEAENDEDD DDDEEDEEED VEEKSTGSLS
GLATNGFDWT ASILDQAEDD DESSDEEDFT QDKKSKKKKQ NIVEDKTADL NTRAPQSVAD
FERLLVGNPN SSILWMNYMS FQLQLSEADK AREIGERALK TINYRDEQEK LNIWIALLNL
ENTFGTDESL EEIFKRSTQY MDSLTMHQKL VSIYSMSEKY YQAEELYKVM TKKFGKSISV
WVQYGSFLLD RKLQEETHEV LAKALQTLPK RDHIEVVRKF AQLEFSKGDA EQGRSLFEGL
VADAPKRIDL WNVYVDQEIK QDNKSKVEDI FERALAKKLS RKQAKFFFTK WLAFEEEKGD
EQMAARIKAR AVEYAQSHK
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