| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_65602 |
|---|
| Symbol | |
|---|
| ID | 4838624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | + |
|---|
| Start bp | 981543 |
|---|
| End bp | 984388 |
|---|
| Gene Length | 2846 bp |
|---|
| Protein Length | 776 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640389939 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384143 |
|---|
| Protein GI | 150865077 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5021] Ubiquitin-protein ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.62617 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.190036 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATACTGCCTT CCTCTACTGA TCCATTAAAC CCGTCCCCAT GTCGGCCAGA ACTACCCCTA
TCAATGTCAA GGTAGTTGCT GCCGAGTCGC TCTACAAACG GGACGTGTTT CGGCAACCCG
ATCCCTTCGC TGTTATCACT GTAGATGGAT CGCAGACGAA AACAACCAAG ACCGCCAAAA
AGACCCTCAA CCCCTACTGG AACGAATCAT TCAACTTCAC CGCACTTGAA GACTCCATCC
TTGTTATCCA GGTGTTTGAC CAGAAAAAGT TCAAGAAGAA AGACCAGGGC TTCCTTGGAG
TAGTCAATGT TCGTATCGGC GATGTCATTG ATCTCCTGTT GTCCAATTCA GAAGAAACAA
TCACCAGAGA CCTTAAGAAG TCCAATGAGA ACTTGGCCGT GTCCGGCAAA ATCATCGTCG
TTATCTCCCA CTCTCGATCC GCTGCCGGCT CTTCCGCAAC CAACGGTTCT GGATCTGGGC
CAACCTCAAA CTCAGTGCCA AACTCTCTGG CTCCTCCTAT TTCAGCTTCG ACATCCTCTA
GAAACAATAC TGGATCCAAC GGCTCGTCTG CTGGTGCCCC TATTTCCACT GCTAACGGTG
AATCTGCAGG CTCTGGCTCT GCCAACAGAC AGTACTCGTC CTTTGAAGAC CAGTACGGAA
GGTTGCCTCC AGGATGGGAA CGTAGAACCG ACAACTTTGG CAGAACCTAC TATGTTGACC
ATAATTCCAG AACAACAACC TGGCAGAGAC CAACGTTGGA ACAGACGGAG TCCGAAAGAG
GCCAACAGAG ACAATCTACA ACAGAAGCAG AAAGAAGACA ACATCGTGGA AGAACTCTAC
CAGGAGAAAC CCCCCAGTCT CCAGACATCA CCAACGCTTC CAGTACCGTA ACTAGCGGCA
ATGTAACCGT AAATGCAACC GGGGCTAACA CCCCTGTAAG CCCTGCTGCT GCCGTATCCA
TGGCTGCTAC TGGCGCTACC ACATCTGGTT TGGGCGAGTT GCCCAGTGGT TGGGAACAAC
GTTTCACGAA CGAAGGCAGA CCATACTTTG TAGATCACAA CACAAGAACC ACCACCTGGG
TCGACCCCAG AAGACAGCAA TATATCCGTA CTTTTGGACC TAATACCACT ATTCAACAGC
AGCCAGTTAG TCAGTTAGGT CCTTTGCCTT CTGGTTGGGA AATGAGATTG ACCAACACGG
CTAGAGTGTA TTTCGTTGAT CACAACACCA AGACGACTAC ATGGGACGAT CCTAGGTTAC
CTTCATCCTT AGATCAGAAC GTTCCTCAGT ATAAACGTGA TTTCAGAAGA AAGGTTATCT
ACTTCAGATC GCAGCCAGCT CTTAGAATCT TGCCAGGACA GTGTCATATC AAGGTTAGAA
GAGATCATAT ATTCGAGGAT TCCTACCAAG AGATTATGAG ACAGACTCCA GAAGATTTGA
AAAAGAGATT GATGATCAAG TTCGATGGAG AAGAAGGTCT TGATTATGGT GGAGTTTCTC
GTGAGTTCTT CTTCTTGTTG TCGCACGACA TGTTCAACCC CTTCTACTGT TTGTTCGAAT
ACTCCTCGCA TGATAACTAC ACTTTGCAAA TTAACCCTAA CTCAGCTATT AATCCTGAAC
ATTTGAACTA CTTCAAGTTT ATTGGTAGAG TTGTTGGCTT AGGTGTCTTC CACAGACGTT
TCTTGGACGC TTTCTTTGTC GGAGCCTTAT ACAAGATGAT GTTGCACAAG AAGGTCATCT
TGCAAGACAT GGAAGGTGTT GACGCAGAGT TCTACAGGTC CTTAAAGTGG ATCCTAGACA
ACGATATCAC CGATGTCTTA GACTTGACGT TCAGTGCAGA GGATGAGAGA TTTGGTGAAA
TCGTAGAAGT AGACTTGAAA CCCGGTGGAA GAGACATTGA AGTCACCGAA GAAAATAAGC
ACGAGTACGT GGAATTCATT TCGGAATGGA AGATTTCCAA GAGAGTCGAA GAGCAGTTTA
AGGCATTCAT TGATGGTTTC AACGAGTTGA TTCCTCAAGA ATTAGTCAAC GTTTTTGACG
AAAGAGAATT GGAATTGTTG ATTGGTGGTT TGGCTGAGAT TGACGTTGAA GATTGGAAGA
AGCATACTGA TTATAGAGGA TACCAAGAAA GCGACCAAGT AATTCAATGG TTCTGGAAAT
GCATTAAGGA ATGGGATTCT GAACAGAAAG CAAGATTATT GCAGTTCACT ACCGGTACCT
CAAGAATCCC TGTCAATGGT TTCAAGGACT TGCAAGGTAG TGACGGTCCT AGAAGATTCA
CAATTGAAAA GGCTGGTGAA CCTAATCAAT TACCGAAGTC GCATACATGT TTCAACAGAG
TTGATTTACC TCCATACAAT GACTACGAGA GTTTGAAGCA GAAATTGACG TTGGCTGTGG
AAGAAACCGT TGGATTTGGA CAAGAATAAT TGTGGTGCAT ATGTATATCG TCATTTCTAG
GCAATAATTT CTCCTCTTTC TCATTTATCG ATCTTTTCTT GTTCTTTTCA TATGTGATTA
CTCCAGACAT GGCAAGAGCA TTGGTAATTT CGAAACGATT TGTGCACTAT GGCTATGCCA
AGGGACATAC TTACAGATAA CGATGTATGC ACATATTCCA TATACATAGT TCAATTCTAG
TATCTACTCA GCCAACACAA CCAGCACCAG GAACAGGATC AAATACATTG TTGGTTGATT
CTCATCTTCG GAAATCTATT GCACTACACT TTACGGGAAA ACACTACTGT TTGGTCATAT
TGTCCTGATT TCTTTTTTTT GTTTGCTTTT ATATATTCTA CTTCATTTTC TTGAGTAATT
GAATTTAATA GTTCAGTTTT TTTACA
|
|---|
| Protein sequence | MSARTTPINV KVVAAESLYK RDVFRQPDPF AVITVDGSQT KTTKTAKKTL NPYWNESFNF
TALEDSILVI QVFDQKKFKK KDQGFLGVVN VRIGDVIDLS LSNSEETITR DLKKSNENLA
VSGKIIVVIS HSRSAAGSSA TNASTSSRNN TGSNGSSAGA PISTANGESA GSGSANRQYS
SFEDQYGRLP PGWERRTDNF GRTYYVDHNS RTTTWQRPTL EQTESERGQQ RQSTTEAERR
QHRGRTLPGE TPQSPDITNA SSTVTSGNVT VNATGANTPV SPAAAVSMAA TGATTSGLGE
LPSGWEQRFT NEGRPYFVDH NTRTTTWVDP RRQQYIRTFG PNTTIQQQPV SQLGPLPSGW
EMRLTNTARV YFVDHNTKTT TWDDPRLPSS LDQNVPQYKR DFRRKVIYFR SQPALRILPG
QCHIKVRRDH IFEDSYQEIM RQTPEDLKKR LMIKFDGEEG LDYGGVSREF FFLLSHDMFN
PFYCLFEYSS HDNYTLQINP NSAINPEHLN YFKFIGRVVG LGVFHRRFLD AFFVGALYKM
MLHKKVILQD MEGVDAEFYR SLKWILDNDI TDVLDLTFSA EDERFGEIVE VDLKPGGRDI
EVTEENKHEY VEFISEWKIS KRVEEQFKAF IDGFNELIPQ ELVNVFDERE LELLIGGLAE
IDVEDWKKHT DYRGYQESDQ VIQWFWKCIK EWDSEQKARL LQFTTGTSRI PVNGFKDLQG
SDGPRRFTIE KAGEPNQLPK SHTCFNRVDL PPYNDYESLK QKLTLAVEET VGFGQE
|
|---|
| |