Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_65602 |
Symbol | |
ID | 4838624 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009044 |
Strand | + |
Start bp | 981543 |
End bp | 984388 |
Gene Length | 2846 bp |
Protein Length | 776 aa |
Translation table | 12 |
GC content | 44% |
IMG OID | 640389939 |
Product | predicted protein |
Protein accession | XP_001384143 |
Protein GI | 150865077 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG5021] Ubiquitin-protein ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.62617 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.190036 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATACTGCCTT CCTCTACTGA TCCATTAAAC CCGTCCCCAT GTCGGCCAGA ACTACCCCTA TCAATGTCAA GGTAGTTGCT GCCGAGTCGC TCTACAAACG GGACGTGTTT CGGCAACCCG ATCCCTTCGC TGTTATCACT GTAGATGGAT CGCAGACGAA AACAACCAAG ACCGCCAAAA AGACCCTCAA CCCCTACTGG AACGAATCAT TCAACTTCAC CGCACTTGAA GACTCCATCC TTGTTATCCA GGTGTTTGAC CAGAAAAAGT TCAAGAAGAA AGACCAGGGC TTCCTTGGAG TAGTCAATGT TCGTATCGGC GATGTCATTG ATCTCCTGTT GTCCAATTCA GAAGAAACAA TCACCAGAGA CCTTAAGAAG TCCAATGAGA ACTTGGCCGT GTCCGGCAAA ATCATCGTCG TTATCTCCCA CTCTCGATCC GCTGCCGGCT CTTCCGCAAC CAACGGTTCT GGATCTGGGC CAACCTCAAA CTCAGTGCCA AACTCTCTGG CTCCTCCTAT TTCAGCTTCG ACATCCTCTA GAAACAATAC TGGATCCAAC GGCTCGTCTG CTGGTGCCCC TATTTCCACT GCTAACGGTG AATCTGCAGG CTCTGGCTCT GCCAACAGAC AGTACTCGTC CTTTGAAGAC CAGTACGGAA GGTTGCCTCC AGGATGGGAA CGTAGAACCG ACAACTTTGG CAGAACCTAC TATGTTGACC ATAATTCCAG AACAACAACC TGGCAGAGAC CAACGTTGGA ACAGACGGAG TCCGAAAGAG GCCAACAGAG ACAATCTACA ACAGAAGCAG AAAGAAGACA ACATCGTGGA AGAACTCTAC CAGGAGAAAC CCCCCAGTCT CCAGACATCA CCAACGCTTC CAGTACCGTA ACTAGCGGCA ATGTAACCGT AAATGCAACC GGGGCTAACA CCCCTGTAAG CCCTGCTGCT GCCGTATCCA TGGCTGCTAC TGGCGCTACC ACATCTGGTT TGGGCGAGTT GCCCAGTGGT TGGGAACAAC GTTTCACGAA CGAAGGCAGA CCATACTTTG TAGATCACAA CACAAGAACC ACCACCTGGG TCGACCCCAG AAGACAGCAA TATATCCGTA CTTTTGGACC TAATACCACT ATTCAACAGC AGCCAGTTAG TCAGTTAGGT CCTTTGCCTT CTGGTTGGGA AATGAGATTG ACCAACACGG CTAGAGTGTA TTTCGTTGAT CACAACACCA AGACGACTAC ATGGGACGAT CCTAGGTTAC CTTCATCCTT AGATCAGAAC GTTCCTCAGT ATAAACGTGA TTTCAGAAGA AAGGTTATCT ACTTCAGATC GCAGCCAGCT CTTAGAATCT TGCCAGGACA GTGTCATATC AAGGTTAGAA GAGATCATAT ATTCGAGGAT TCCTACCAAG AGATTATGAG ACAGACTCCA GAAGATTTGA AAAAGAGATT GATGATCAAG TTCGATGGAG AAGAAGGTCT TGATTATGGT GGAGTTTCTC GTGAGTTCTT CTTCTTGTTG TCGCACGACA TGTTCAACCC CTTCTACTGT TTGTTCGAAT ACTCCTCGCA TGATAACTAC ACTTTGCAAA TTAACCCTAA CTCAGCTATT AATCCTGAAC ATTTGAACTA CTTCAAGTTT ATTGGTAGAG TTGTTGGCTT AGGTGTCTTC CACAGACGTT TCTTGGACGC TTTCTTTGTC GGAGCCTTAT ACAAGATGAT GTTGCACAAG AAGGTCATCT TGCAAGACAT GGAAGGTGTT GACGCAGAGT TCTACAGGTC CTTAAAGTGG ATCCTAGACA ACGATATCAC CGATGTCTTA GACTTGACGT TCAGTGCAGA GGATGAGAGA TTTGGTGAAA TCGTAGAAGT AGACTTGAAA CCCGGTGGAA GAGACATTGA AGTCACCGAA GAAAATAAGC ACGAGTACGT GGAATTCATT TCGGAATGGA AGATTTCCAA GAGAGTCGAA GAGCAGTTTA AGGCATTCAT TGATGGTTTC AACGAGTTGA TTCCTCAAGA ATTAGTCAAC GTTTTTGACG AAAGAGAATT GGAATTGTTG ATTGGTGGTT TGGCTGAGAT TGACGTTGAA GATTGGAAGA AGCATACTGA TTATAGAGGA TACCAAGAAA GCGACCAAGT AATTCAATGG TTCTGGAAAT GCATTAAGGA ATGGGATTCT GAACAGAAAG CAAGATTATT GCAGTTCACT ACCGGTACCT CAAGAATCCC TGTCAATGGT TTCAAGGACT TGCAAGGTAG TGACGGTCCT AGAAGATTCA CAATTGAAAA GGCTGGTGAA CCTAATCAAT TACCGAAGTC GCATACATGT TTCAACAGAG TTGATTTACC TCCATACAAT GACTACGAGA GTTTGAAGCA GAAATTGACG TTGGCTGTGG AAGAAACCGT TGGATTTGGA CAAGAATAAT TGTGGTGCAT ATGTATATCG TCATTTCTAG GCAATAATTT CTCCTCTTTC TCATTTATCG ATCTTTTCTT GTTCTTTTCA TATGTGATTA CTCCAGACAT GGCAAGAGCA TTGGTAATTT CGAAACGATT TGTGCACTAT GGCTATGCCA AGGGACATAC TTACAGATAA CGATGTATGC ACATATTCCA TATACATAGT TCAATTCTAG TATCTACTCA GCCAACACAA CCAGCACCAG GAACAGGATC AAATACATTG TTGGTTGATT CTCATCTTCG GAAATCTATT GCACTACACT TTACGGGAAA ACACTACTGT TTGGTCATAT TGTCCTGATT TCTTTTTTTT GTTTGCTTTT ATATATTCTA CTTCATTTTC TTGAGTAATT GAATTTAATA GTTCAGTTTT TTTACA
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Protein sequence | MSARTTPINV KVVAAESLYK RDVFRQPDPF AVITVDGSQT KTTKTAKKTL NPYWNESFNF TALEDSILVI QVFDQKKFKK KDQGFLGVVN VRIGDVIDLS LSNSEETITR DLKKSNENLA VSGKIIVVIS HSRSAAGSSA TNASTSSRNN TGSNGSSAGA PISTANGESA GSGSANRQYS SFEDQYGRLP PGWERRTDNF GRTYYVDHNS RTTTWQRPTL EQTESERGQQ RQSTTEAERR QHRGRTLPGE TPQSPDITNA SSTVTSGNVT VNATGANTPV SPAAAVSMAA TGATTSGLGE LPSGWEQRFT NEGRPYFVDH NTRTTTWVDP RRQQYIRTFG PNTTIQQQPV SQLGPLPSGW EMRLTNTARV YFVDHNTKTT TWDDPRLPSS LDQNVPQYKR DFRRKVIYFR SQPALRILPG QCHIKVRRDH IFEDSYQEIM RQTPEDLKKR LMIKFDGEEG LDYGGVSREF FFLLSHDMFN PFYCLFEYSS HDNYTLQINP NSAINPEHLN YFKFIGRVVG LGVFHRRFLD AFFVGALYKM MLHKKVILQD MEGVDAEFYR SLKWILDNDI TDVLDLTFSA EDERFGEIVE VDLKPGGRDI EVTEENKHEY VEFISEWKIS KRVEEQFKAF IDGFNELIPQ ELVNVFDERE LELLIGGLAE IDVEDWKKHT DYRGYQESDQ VIQWFWKCIK EWDSEQKARL LQFTTGTSRI PVNGFKDLQG SDGPRRFTIE KAGEPNQLPK SHTCFNRVDL PPYNDYESLK QKLTLAVEET VGFGQE
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