| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_59178 |
|---|
| Symbol | WDR6 |
|---|
| ID | 4838908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | + |
|---|
| Start bp | 618889 |
|---|
| End bp | 621894 |
|---|
| Gene Length | 3006 bp |
|---|
| Protein Length | 990 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640390223 |
|---|
| Product | conserved hypothetical protein |
|---|
| Protein accession | XP_001384085 |
|---|
| Protein GI | 150865035 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2319] FOG: WD40 repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.55333 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CATTATGGTC CAGTCACTGC CTTGAAAGTC CACTCACAAT ATGTTTTGGC TGGTTATGGC
TGTATTTTGA AACTTTTCAA GATAAATACC ATCTCGAACC AAACCAGTCT CATTTTCACC
CAGCAAGTTT TCAAGAAAAA CAAAATTCAC CATATCACTG TAAGTCCAGA AGGAAGTAAG
GTAGTAGTAA GTGGTGGTAG ATCTTTTGCA GTTTTGGATC TCAAGCAATT GACCTCAAAC
TCTTCTGTCT CTGTAACTGA AAAAGCTATC AATGAATGGA TCACTACTTC TGAATTCTTG
AACGAAAACC TCCTTTTAAT TTTGAACTCG CACAATACCA TCTACCAAAT TGATGTTTCA
CAACTGTCAA CCACTCAGAA CTTTGTTTTA GTGGAAAAAG TCGATTGTAA CGAAAAGTCG
ATTTTGTACA GTGGCTCCAT TAGAGTGCTA GCCGACCATC GAGTATTGGT AGCAGCTGGA
ACTGTCATGA GCGGAGTCCT CATCTGGGAT ATGAATTCGA GACAGATTCT CCACAATTTG
ACGGAACATG AAGGCTCCAT TTTTGGTGTA AAGATCGACA AAACAGGTAG ATACATTGTA
TCTTGTTCTG ATGATAGGTC TATAAAGTTG TACAACTTTG AGAATGGGGC TCTTTTGGCA
ACTGGATGGG GTCATGGTTC GAGAATATGG ACTCTTGAAT TTTTCCATGA CCAATCTAAT
GGCATCAAAT TGATGAGTGG AGGCGAGGAT TGCACCGTCA GAATCTGGAA GTACTTAGAT
GGCCAAGAGA TTTTGACCCA AGAAGAGTTA TGGGAAAATG CTCATAGAGG TAAGCATGTC
TGGTCAGGAG ACTTGGATGA TATTAGCCTA CAGATTTGTG TTACCGGTGG AGCAGATGGT
AGAATAAGAC TTCATGATAT ACTGGGTAGA AGTACCAGAG AAGAGTACAG ATTAGATTAT
ATCTTTGAAA CTTCTGGTTT GAAACTCCAA AAGAACGAAA TTATCAAACA ATACTTCTTG
TTATCACAAT TGAACTCCTT GATCATTTTG ACGTCCCACG GTAGTCTCAT TTTGTTTAAT
GAAGTCCTGA AATTATTCTC TAAAATACAG CTTGATGCCG AGGAGACTGC CAGATTCACA
AATTTCGGTG TAATGAAGGG ATTTGATAAC ATCAATACTG TAGTGTTATG TACCCGTAAC
GGCAGTTTCT TGATTCTTGA ATTTTCTTCA ACTGATGTTC AACCAAATAA ATATTGGGTT
GAAGACGAAC ACTTGCAAGG CAATAAGGTT ACCAACTTTA TGGCTCAAGC AGACGAGGAA
AGTAACAAGT ATTACCTTTT TCTTGACTCT CCTAACCCAA AAATTCCTTT CATTTTGAAA
GAATTCACAA CTATAGACAA TAGATTCACC TACGTTAGCA CTAAGCTCTT GAATCAACCA
CAGCAGGCTA GTTTTACTAC AACTGACATG GTGATTGACA TGAAGAACAA ATGGTTGGTT
TTGGGCTCAA GATATGTTAC TGTAGCAGTA TATGACTTGG ATTCTGACGA AGAAACTTTG
GAATTGCAGT TGATAGAAAA AAAGCTTTCT GCTGGTGACA CTATTACTTC GGTTTCCATA
ATCGAAAGTA AGAGAAACGA AATCTCTGTG TTGCTTACTG TTAGGGATGG AGTGTACATG
TTTGCAAAGA TTTTGAAAGA TGAAGCTGGC GAGTTGTCAC TAAATGTTCA TCACCATAAT
AAGATCTCCA GAGGTTTCAT TGAAGGAGGT TGTCTTGTTG CCAACGACTT GATCCTCTAC
GGATTTAAGT CTTCCTATTT CTACGTTTGG AACGAATCGA AACAAATAGA AATTACCAAT
GAACTCTGTG GTGGGTCTCA TAGGCAATGG GAATTATTCA AAAATGATTC TGATTTCAAA
TTCATCTACA TTAACAAGTC AAGTTTATAT ATCAAACATT ACAAATCAAG ATTCACTGAA
GCCAGAGGTT TGTTGAATGA CGGAACTCAT GGAAGAGAAA TTAGGGACGT TAGCATTTGT
ACAGAAACTT TGGCTGATAA CTCCAGATTG ATAATGTCAG CTTCGGAAGA TACCACAGTT
AGATTGAGCA AGTTACACGC CAACGGAGAA ATCGAGAACT TCTGGAGTTT GAACAATCAT
GTTTCGGGAT TACAAAGAGT CAAATTCATG AGCCGAAACT TTGTTGGAAG CTCTGCTGCA
AACGAAGAAT TCTATATTTG GAAATTGGAT ACCTTCAATG ATAATGTGCC AATTTCTGTG
GAATACGCCA GATTGAAGCC TTCAAGTGAC AATCCTGACT TGCGTGTCAT GGATTTTGAT
TCTTTCCCAT ACAAGAATGG TTTCATAATT GCCACAGTAT ATTCGGATTC CAACATCAAA
ATTTTGTACT TCGATATCCC AACCAAGAAG TTTGACTTGC TTCTTAATGA TTTCTACACA
ACTTGTTGCA TCTTGAACGT TCACTTCTTG ACAGTCGGCA CTAGCACTTA CTTGCAAATT
GGAGCTACCG ATGGTCATCT TACTATTTGG GATGTCACCA GCATTCTCCG AAACATTTCA
GAAAAGCCTA ACAAGTTTGA AAAAGCTATT ATCAAACAGC AATTGCACCA GAACGGTATC
AAGGGCTTGT TGCTTACACC CAAAAAGAAC GGCTATAGGA TAATTACCGG TGGTGACGAC
AATGCACTTG TATACTCTCA ATTGAGTCAA TCTGAAGATG GCCAACTAAG CCTAGAAGTC
AAAGATTTTG TAGAGGGTGC AGCTTCATCT ACAATTACAT CCATTTCGGC TGCTTCAGGG
GAAACTTTCA TTGTGACATC AGTAGATCAA ATTATCAGGA AATGGAATTT GGTCAATGAG
AAATTGACTG TAGAATCTGC CAGATACACC ACGATTGCTG ATACTGGATG CAGTGATTCC
ACTGTCGTGA ACGGCGAGTC CATAATAGTC ATTGGTGGTG CTGGTCTTAG TAGCTGGAAA
TGCTAA
|
|---|
| Protein sequence | HYGPVTALKV HSQYVLAGYG CILKLFKINT ISNQTSLIFT QQVFKKNKIH HITVSPEGSK
VVVSGGRSFA VLDLKQLTSN SSVSVTEKAI NEWITTSEFL NENLLLILNS HNTIYQIDVS
QSSTTQNFVL VEKVDCNEKS ILYSGSIRVL ADHRVLVAAG TVMSGVLIWD MNSRQILHNL
TEHEGSIFGV KIDKTGRYIV SCSDDRSIKL YNFENGALLA TGWGHGSRIW TLEFFHDQSN
GIKLMSGGED CTVRIWKYLD GQEILTQEEL WENAHRGKHV WSGDLDDISL QICVTGGADG
RIRLHDISGR STREEYRLDY IFETSGLKLQ KNEIIKQYFL LSQLNSLIIL TSHGSLILFN
EVSKLFSKIQ LDAEETARFT NFGVMKGFDN INTVVLCTRN GSFLILEFSS TDVQPNKYWV
EDEHLQGNKV TNFMAQADEE SNKYYLFLDS PNPKIPFILK EFTTIDNRFT YVSTKLLNQP
QQASFTTTDM VIDMKNKWLV LGSRYVTVAV YDLDSDEETL ELQLIEKKLS AGDTITSVSI
IESKRNEISV LLTVRDGVYM FAKILKDEAG ELSLNVHHHN KISRGFIEGG CLVANDLILY
GFKSSYFYVW NESKQIEITN ELCGGSHRQW ELFKNDSDFK FIYINKSSLY IKHYKSRFTE
ARGLLNDGTH GREIRDVSIC TETLADNSRL IMSASEDTTV RLSKLHANGE IENFWSLNNH
VSGLQRVKFM SRNFVGSSAA NEEFYIWKLD TFNDNVPISV EYARLKPSSD NPDLRVMDFD
SFPYKNGFII ATVYSDSNIK ILYFDIPTKK FDLLLNDFYT TCCILNVHFL TVGTSTYLQI
GATDGHLTIW DPNKFEKAII KQQLHQNGIK GLLLTPKKNG YRIITGGDDN ALVYSQLSQS
EDGQLSLEVK DFVEGAASST ITSISAASGE TFIVTSVDQI IRKWNLVNEK LTVESARYTT
IADTGCSDST VVNGESIIVI GGAGLSSWKC
|
|---|
| |